Detail information of Os01g0919600_circ_g.9


General Information
CircRNA Name Os01g0919600_circ_g.9
ID in PlantcircBase osa_circ_040756
Alias NA
Organism Oryza sativa
Position chr1: 40131174-40131250  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os01g0919600
Parent gene annotation Protein of unknown function DUF707 family protein. (Os01t0919600
-01);Similar to predicted protein. (Os01t0919600-02)
Parent gene strand +
Alternative splicing Os01g0919600_circ_g.2 Os01g0919600_circ_g.3 Os01g0919600_circ_g.4 Os01g0919600_circ_g.5 Os01g0919600_circ_g.6 Os01g0919600_circ_g.7 Os01g0919600_circ_g.8 Os01g0919600_circ_g.10
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os01t0919600-02:1
Os01t0919600-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GAACGCCTCGAGATCTCCCAGCCCGCGCTCGACCACCGggcttcgaccccatccgctacctccg
cgtcgtccgccgc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 77
Transcript exons: 40131174-40131250
GGCTTCGACCCCATCCGCTACCTCCGCGTCGTCCGCCGCGAACGCCTCGAGATCTCCCAGCCCG
CGCTCGACCACCG

Genomic sequence GGCTTCGACCCCATCCGCTACCTCCGCGTCGTCCGCCGCGAACGCCTCGAGATCTCCCAGCCCG
CGCTCGACCACCG
Conservation Information
Conserved circRNAs NA
PMCS 0.148268398
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study