Detail information of BGIOSGA015185_circ_g.1


General Information
CircRNA Name BGIOSGA015185_circ_g.1
ID in PlantcircBase osi_circ_014305
Alias Chr04:19931404_19932311(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 17152155-17153062  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA015185
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered BGIOSGA015185-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAAGGGAACTCACCCAAAGGCGTTGGAGCTTCACACAGCGGCTAATCATTTTTGTAAGGTCAG
AAGCATCAAGTGTGGGGGCATAGCTCAAGTTCAATCcatataatttctccactttaggcagatc
tccatggttttcctccatttcattgctaccatcccgctcatttatgacctcaacattgagcatc
ggcatctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATATAATTTCTCCACTTTAGGCAGATCTCCATGGTTTTCCTCCATTTCATTGCTACCATCCCG
CTCATTTATGACCTCAACATTGAGCATCGGCATCTTTGACGCAAGGACTTGGCACCCCTTTAAC
GTGACATTGCAAGATGACATCCAAAGGGATCGCATTGTCTCGTACCTAGCAAAATTCCCCAAGA
GTGCAGCATCACCAAACGGGCTATCTCTTATCTCCAGTTTCCTTAAATTCTTGCATCCATTCAT
AACATGCATCATACCCTTATCACTGTCACCAGCAAATGCTATAGAAAGCATCTCAAGTTGTTTT
GCATATTTCCCAATATACATGAAAACCTTGTCTGTGAGAAGACCAGATATTGACAAACGTTGTA
ATCCCTTGCACTCACGAACAATAGCTCCAAAGCCTTCATCTAATGGTTGGCTTGTCACAACATC
AGGCTTCCCTGGCTCAAGAATACAAAGTCTGAATCGTGTGAAATTTGGACAGTTCTTGGCGACA
GTAACTAGTGCAGCATTAGTCATTTGGTGACAGAAGTACAGTAGTGAGTTCAGTTTTGGACAGC
CCAAGGATACTGCAACAAGTCCCTCCTCTGTCACTGCAGAATAACCAGCAACGTAGAAATCTGA
TGGAAATACCCTGAGTTCTTGCAAGTCTTTGCAACTGGAGGCCACCACTTGCAAGCCTTTGTCC
GAGATACAATCCAGTACCTGCAATATAAAGGCTCAATACCGTTACTTGCTTGATATTACCAAAG
GGCAACAACAACAACAACAAACAAGAATAAGTACAAACCAACAAGGGAACTCACCCAAAGGCGT
TGGAGCTTCACACAGCGGCTAATCATTTTTGTAAGGTCAGAAGCATCAAGTGTGGGGGCATAGC
TCAAGTTCAATC
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021