Detail information of BGIOSGA016344_circ_igg.1


General Information
CircRNA Name BGIOSGA016344_circ_igg.1
ID in PlantcircBase osi_circ_014336
Alias Chr04:20804692_20809059(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 18040732-18045103  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   igg-circRNA
Identification method CIRI2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA016344_circ_igg.2
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CGACAATGATCATGAGGACGGGGCCCGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAG
AAAGTCTGGTGCTGTTGCACGGTTTAACAGCGTTAGggcgatgtgggcaatgtctactttgggc
caaatcacccgatgaaaccacatcgactttgtatgacacatcatcttgtgctttcatatgatct
tcacaaga
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGCGATGTGGGCAATGTCTACTTTGGGCCAAATCACCCGATGAAACCACATCGACTTTGTATGA
CACATCATCTTGTGCTTTCATATGATCTTCACAAGAAGATGGAGATATATGTCAGTATGAACTT
TATTTATTCCCTTCGTTTGCACTTGTTAACTGCCTAAAGTTCCTTTCACCTCTTACTTTTCACA
CAACGATTTATGCAGAGGCCCCACAAAGCATATCCAACAGAGCTCGCACAGTTCCATTCTGCTG
ATTATGTGGAATTCTTGCATCGGATAACTCCTGACACCCAACACCTGTATGAAAATGAATTACG
TAGATGTATGAATTATGAAACTTTTCTCCTCTATGAACTAGTACTCTGGGATTTGTTAATTTTA
CAATAAAATAAAATGGTTGTCACATATCTTGCTACTCATGTTTAAATTATTATAAATTTATTTA
TTAAGTTCCTTACCTGGATCTAATAAGTAGCTTAGATCTTCATGTACAGTTAAACTATAAGGAA
TCTCATACACAACTTAAGGCTAATTAGCTTCATTTACATGAATGCTGTCAGGTGTATATTCACG
ATATGCCTATTTGACAATTCAAGGAAAATGAGGGCATGTTTGGTCCCCTTTCAAGCTCAAGCAA
CTTCCCATCTAACGCTGCCTAGATAGCGTTGGTGTTTAGTACAGCTTAGCGAGTCATTCGTCAT
AGGATGTATATCCTTGCCCATTGAAGCGCATCCCTTGTGGTCAAGGTTTACATGATTTGGTGCA
CTAAATAGTTTTGGATATCTTTACAGTATTTTATATAGTATTAGTTGCACTCTTCTAGGACACA
TGTGCTTATTTTACAGTTTCAGGGCAAAATAACTGAACACCTAACCTAAGTAGCAGAGTAATCT
GGACAAAAGATCCAACTTACCCACTCTTAGAGCTTTTCCCCAATTGAAGTTGGTTTCCAACATA
ATCCTCATGCCTTTTGGAGCTTTCTAACTTCATTTATCTGGTTCCTTCATATTTGTTCCCAGAC
AATCTTGGAGAAGACTGCCCAGTCTTTGATAATCTGTTTGAGTTTTGCCAAATATATGCTGGAG
GAACTCTAGGTAATATGAAAATTCTGAATGCTTCTTTCTAAAGTGAACTCTTAAGTTCTTTGCT
ATTTTAGATGCGGCTCGCAGATTGAATCATAAAACATGTGATATTGCTATCAATTGGGCTGGTG
GATTGCATCATGCAAAGAAGTGCGAGGCATCAGGGTTCTGCTACATTAATGATCTGGTTTTGGG
AATTCTGGAGCTTCTCAAGTACCATGCCAGGGTTCTCTATATTGATATCGATGTTCATCACGGG
GATGGAGTTGAAGAAGCCTTTTATTTCACTGACAGGTTCATGCTGTTTCCAATAAAGTCATGGA
TATGTAGTTAATCATTTATTGCTGCCAATATTTTTCCAATCCAATTTCCATCTCTGTGCATTTT
GTGAATTTTGGTGGTACCATAATATTTATACTAATTCCAGTCTCGGGCTTTTGATTTTGCAGGG
TATACTAATATTGTATACTTATTTTGATTTTGCAGGGTAATGACTGTAAGTTTCCACAAGTATG
GTGATTTTTTCTTCCCTGGCACAGGTGATATTAAGGTAATGTTCCACTAACAAGCTCCTGAATA
TTTTTTATGTACTTTTTGGTATGATGTGGTTGGTGATTGGCCCTTCTCTGCATTCTGTTTTATC
CTTACCCTTTTCGCATGAAGTGTGTGTGACATGCGTACTCTCATTTGTGTGAAAAAAGAAGAGA
CAGATTAACCAAAGATGGTCCCCAGTTGATTTTGTAATGCACAAAATTGATAGCACCTGTAGGT
AATTGTTTATGAGCAGTTAATCTTGTTTCTTTTTAGTTCTACCCGCCAAGAGGCTGTAAATATG
TAACATCATAGAGTTGAACTTTGGTTTTTTTTACTGGAGATTCTTGGCATGTTATTCTATTTAA
ATATCAACCATTGTAATTGGGAATTCAGGTGGTTATGTATTTGAAAAACGTCATACTAGAAAGC
ATCATAATTCGTATACGCATGCTTAATTGTCATCTGGGCTGACAAAAAAAAAACATGTGCACAT
ATACGCCCATCATTTGAATCTTGTAGTATGTTAATTTGTTATGTATCCACTGTACTACTAGGCA
ACTTTATTAAATAAAAATATCCCAAATAACTGGAAGGTAGAGCAAGTGTGCTACAAAAAGGGCA
AGGTTGAAAATGAACATAAAACATGCCATGTTCTTCTCAGTAACGATGATACTTTATATAGCTT
CGTTTTAAATGATTGTGCTGCTTCATATTGATTTACCTGACTCTCATTTGAAGGATATAGGAGA
AAGAGAAGGAAAATATTATGCCATTAACATTCCACTTAAAGATGGGATAGATGACTCCGGCTTT
ACTCGCCTTTTTAAAACAGTAAGCCCACTTTACATTACTTTCTCATCTTTCATGTCATTGTTTA
GTCTTATCAAGTTATGCATGTCTATTATGTAGGTTATTGCCAAAGTTGTTGAGACATATCTGCC
AGGTGCTATTGTTCTTCAATGCGGGGCTGATTCCTTGGCACGGGACCGTCTGGGGTGCTTCAAT
CTGTCCATTGAAGGTTCTGTACTTCTTAAATCTGATGTGTACTTGTTGATTCAGCAGAACTGTG
CTCTAGATGTAAAGTTAGTGAACTGTGCTGCATATTCTTGGATGAGCTATTAGGGTTCAGGCGG
TATCTTCGAGATAATGTGAAACCTTCTCTCAAGTCTCAATTATTTCTTACCATAGTTTTGAGAT
TGTTATTGCACTAATAGTTCTGACTTATTTTGAAATTTAAATTTTGTTTCTTTGAGCTATACTT
AGTGAATGATCTTTTAATACTTGCATGTGTACTTGCAAACAGGCCATGCTGAATGTGTGAAGTT
TGTCAAGAAATTCAATATCCCTCTACTGGTAAGGAGAAACCGTTACTGCGTGTGATTTCTCTTG
TTCCTCCTTGGATATCAATGTATTTCTCATCATGCAGGTGACTGGGGGTGGTGGATACACAAAA
GAGAATGTAGCACGCTGTTGGGCTGTTGAAACTGGTGTTCTTCTAGATACGGAGCTCCCAAATG
GTATTCTTTTCTTTTGCAATTCTGTACTTCTCGGTCCTTTTGGCCTGTTGTTTTAGAGGACACT
ACTAGTAATCCCTCAAATGCATGCAACAGTTCATGTATTCTTTTCCTCACATTTGCTGGCATAT
CAAGTTGCAAACAGATCTATCAAGAACGGGATTGACTAGTAGAGTTCCTTAATAATTTCTAAAA
CAGCAGTCTGTGATATGAGTTTTGCATGACTTTCCTTTGCAGAAATTCCAGACAATGAATACAT
CAAATACTTTGCTCCAGATTATACATTGAAAGTATCGAATGTGAACATGGTATGGAACCTTTTC
TCATTGGCCTTTGTTTGTCCTACGGTTGTTTGGTGCATTGATATTTGATTGCTATTAGGTGCAT
CAAGTAACTGTCCTTTTATTACTGAGTATGGTCTAAGCATTTGAGCTCTGTAGTCCATTTGGTA
TTTCGGCTATTCAATTGGTTTGTGTTTGCTAGAAGTTTAGAACTTGCGTTCCTTTCTTGAGAAT
GTGCAAATGCCATATCACATGTTGTGTTTTAACCGGAGCAGGACAACTTGAATAGCAAGTCATA
TCTAAGTTCAATCAAAGTGCAAGTCATGGAGAGTTTGCGGGCCATACAACATGCGCCTGGTGTT
CAGATGCAAGAGGTTAGTTTTTGATTCACTTACACGAGGAAACCTCCCAACTGGAATTTGCTAT
GTAAAAAAAAGGGATACAAGCAGGACACTATAATATTCCTTTCCTTTTGTTGCCTATCTTTTTC
TTCGTTCGACATATTTCTGAACAAGAACATTATTAACATTTTTGCAGGTTCCACCAGATTTTTA
TATCCCAGATATTGATGAAGATGAGCTGGATCCTGATGAACGTGTAGATCGTAAGTGAAATACT
CCTGGGATGCATTAGGATGCTAATATGTCTGGGTGTCTGCTGTTCCAAGAAAACGAACGGCAGA
CAGTTGTTTTTTTTAGTATATGTTGTGTGTTCCACATTATGCTAGTCCTTTCTTCGTGTTGTTT
TCAGACCTTTGAACTTTATATCGTCCTTATACATTAACTGTGTAAAATGTTGCGCAGAGCATAC
CCAAGACAAGCAGATTCATCGCGATGACGAGTACTATGAAGGTGACAACGACAATGATCATGAG
GACGGGGCCCGTTGAAAAAGGTTCTTTGTATGATGAAACTGGATAGAGAAAGTCTGGTGCTGTT
GCACGGTTTAACAGCGTTAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021