Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d009147_circ_g.1 |
ID in PlantcircBase | zma_circ_009584 |
Alias | zma_circ_0002960 |
Organism | Zea mays |
Position | chr8: 39585229-39585608 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d009147 |
Parent gene annotation |
CONTAINS InterPro DOMAIN/s: NEFA-interacting nuclear protein NIP 30 N-terminal (InterPro:IPR019331); Has 398 Blast hits to 395 pr oteins in 139 species: Archae - 0; Bacteria - 6; Metazoa - 193; Fungi - 83; Plants - 36; Viruses - 0; Other Eukaryotes - /.../ou rce: NCBI BLink). |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | No-No |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d009147_T002:1 Zm00001d009147_T001:1 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.121944737 |
Functional Information | |
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Coding potential | N |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |