Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G18700_circ_g.6 |
ID in PlantcircBase | ath_circ_003341 |
Alias | 1:6441365-6441943 |
Organism | Arabidpsis thaliana |
Position | chr1: 6441365-6441943 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | find_circ; CIRI2 |
Parent gene | AT1G18700 |
Parent gene annotation |
DNAJ heat shock N-terminal domain-containing protein |
Parent gene strand | + |
Alternative splicing | AT1G18700_circ_g.5 AT1G18700_circ_g.7 AT1G18700_circ_g.8 AT1G18700_circ_g.9 AT1G18700_circ_g.10 AT1G18700_circ_g.11 AT1G18700_circ_g.12 AT1G18700_circ_g.13 |
Support reads | 1/1 |
Tissues | root;leaf |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | AT1G18700.5:3 AT1G18700.6:3 AT1G18700.3:3 AT1G18700.2:3 AT1G18700.1:3 AT1G18700.4:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.185423287 |
Functional Information | |
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Coding potential | NA |
Potential coding position |
NA |
Potential amino acid sequence |
NA |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Philips et al., 2020 |