Detail information of AT2G26470_circ_g.2


General Information
CircRNA Name AT2G26470_circ_g.2
ID in PlantcircBase ath_circ_014982
Alias NA
Organism Arabidpsis thaliana
Position chr2: 11261810-11262177  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G26470
Parent gene annotation At2g26470
Parent gene strand -
Alternative splicing NA
Support reads 1
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G26470.2:2
AT2G26470.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATACAATGAACAACAACACCATCACCAACAACTTCTTCATTGTCTCTCCGTAGAACAGGTATA
TAGGATCCAGGGGCAACATTGTAAGATGGACGATAAccatcaactgcaacaaggcacctattct
tgggaagcaatcgacgaaaagacgctttctcagccacagattcagaccgagcattaaactacag
aaatatat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCATCAACTGCAACAAGGCACCTATTCTTGGGAAGCAATCGACGAAAAGACGCTTTCTCAGCCA
CAGATTCAGACCGAGCATTAAACTACAGAAATATATATAAACAAAAAGGATATTCAGTTCTTCA
CTATATAATAGCCTCACGTCAACAAAAACAGATTCAATAAACTTGTAATAAGTCCCAAATCAGA
AATAGTAAACTTATACCATTTTGAAGAAATCAGGCTTATCAGTTTTCTTAGTGAAACTTGGCAC
TAATCCCCACTTCATACAATGAACAACAACACCATCACCAACAACTTCTTCATTGTCTCTCCGT
AGAACAGGTATATAGGATCCAGGGGCAACATTGTAAGATGGACGATAA
Conservation Information
Conserved circRNAs NA
PMCS 0.18238913
Functional Information
Coding potential Y
Potential coding position 11262081-11261812(-)
Potential amino acid sequence MKWGLVPSFTKKTDKPDFFKMFNARSESVAEKASFRRLLPKNRCLVAVDGYRPSYNVAPGSYIP
VLRRDNEEVVGDGVVVHCMKWGLVPSFTKKTDKPDFFKMFNARSESVAEKASFRRLLPKNRCLV
AVDGYRPSYNVAPGSYIPVLRRDNEEVVGDGVVVHCMKWGLVPSFTKKTDKPDFFKMFNARSES
VAEKASFRRLLPKNRCLVAVDGYRPSYNVAPGSYIPVLRRDNEEVVGDGVVVHCMKWGLVPSFT
KKTDKPDFFKMFNARSESVAEKASFRRLLPKNRCLVAVD(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017