Detail information of BGIOSGA014432_circ_g.1


General Information
CircRNA Name BGIOSGA014432_circ_g.1
ID in PlantcircBase osi_circ_014728
Alias Chr04:30821697_30822311(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 28957986-28958600  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method CIRI2, CIRCexplorer2
Parent gene BGIOSGA014432
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-Yes
Splicing signals   CT-TA
Number of exons covered BGIOSGA014432-TA:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATACCTCATAGCACGGTAGAGAGGCCTATACCATATCAAGTACGACAGGGGAATTCCAAGCA
AGGCATAGATAGTGGCAAGGAAAAACAGCTTCGAATcgttaatgattttccatgaaacacaatt
ggcggggcaatggcagcaataatgcaaaagccaatgtggatctgtgccaaatatcaatgaaaag
aagatgat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGTTAATGATTTTCCATGAAACACAATTGGCGGGGCAATGGCAGCAATAATGCAAAAGCCAATG
TGGATCTGTGCCAAATATCAATGAAAAGAAGATGATATGATCCATTTGATAAGCAGTAGTTGTA
ATGTCAAGAAAACATAAAAAAACAGTTTTCAGCTATAACTTACCAAGTAACAGAGAAAGAACCA
TCCAAAACTGAACGCACTGTTAGTCCTGTTTAACAAGTAAAAGAAAGTGTCAGATACAATAATA
AAGCCATGGTTCCAGAACTATACAGCACAAACCATAGTTCAGGTCCACTGAAATGTTTTATACT
AGCTCCACAAAGGAGCAGTGCAGGTCTGCATAAACTTTTGTGCAAAAGAGATGCATTCTCTGTA
AAATGCACTGATGGAAATAAGCAAGATAACTGAAATGCGCTAACTAAAATATAACACCTGTAGC
AAGATGCGCTAACAAAAATAATACTCTTTGAAAGACACATTAACAGAAAGAGTGGTAAAGCAGA
AAAATATACCTCATAGCACGGTAGAGAGGCCTATACCATATCAAGTACGACAGGGGAATTCCAA
GCAAGGCATAGATAGTGGCAAGGAAAAACAGCTTCGAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021