Detail information of AT2G05170_circ_g.1


General Information
CircRNA Name AT2G05170_circ_g.1
ID in PlantcircBase ath_circ_012838
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1870385-1870735  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method circRNA_finder, find_circ
Parent gene AT2G05170
Parent gene annotation Vacuolar protein-sorting-associated protein 11 homolog
Parent gene strand +
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered AT2G05170.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTTTCTAGTCTTGGAGGAAGTTCCACCAATATTGCTTATAGCCATTGGCTTAGATAATGGCT
GCATTTATTGTGTCAAAGGAGACATTGCACGAGAGCgaactttctcgtcaccgtcggagaagat
gaacaaatatcgccgcaacagtcagggatgtgtcttaaggtttttgatcttgacaaagttcagg
aggaaggt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GAACTTTCTCGTCACCGTCGGAGAAGATGAACAAATATCGCCGCAACAGTCAGGGATGTGTCTT
AAGGTTTTTGATCTTGACAAAGTTCAGGAGGAAGGTACTAGTTCCTCGGCTCCTGAATGCATTG
GTATTCTTAGAATTTTCACCAATCAGTTTCCTGAAGCTAAGGTAATAATCTCTTCCCTGTTATA
ATACTTGACGTATATACTGAGGTTTGATGATGGAATATCATGTGTAATTGCAGATTACTTCTTT
TCTAGTCTTGGAGGAAGTTCCACCAATATTGCTTATAGCCATTGGCTTAGATAATGGCTGCATT
TATTGTGTCAAAGGAGACATTGCACGAGAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.191381221
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017