Detail information of Zm00001d000040_circ_igg.1


General Information
CircRNA Name Zm00001d000040_circ_igg.1
ID in PlantcircBase zma_circ_002998
Alias circ1889
Organism Zea mays
Position chrB73V4_ctg182: 637163-650348  JBrowse»
Reference genome AGPv4.38
Type   igg-circRNA
Identification method CIRCexplor2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Zm00001d000040_circ_igg.2
Support reads 4
Tissues seedling leaves
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATCCCTTCGTGGTCTGTATACTTGTTTTGGGATAGGTCAAGAATTTCATATCAATTGGGGGT
CCTCATGCTGGTACAGCTTCAGTGCCACTTTGTGGTgtgaaattggaagaggagcatgggactc
ttggttaatgccacttcaagagcaggtttgttccttagagttgtaactagatagtgttttatgg
tgtgtgtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs NA
PMCS 0.001492373
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017b