Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d047471_circ_g.1 |
ID in PlantcircBase | zma_circ_010041 |
Alias | zma_circ_0003077 |
Organism | Zea mays |
Position | chr9: 131197910-131199820 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d047471 |
Parent gene annotation |
DNA helicase INO80 |
Parent gene strand | - |
Alternative splicing | NA |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d047471_T014:7 Zm00001d047471_T015:2 Zm00001d047471_T001:7 Zm00001d047471_T012:3 Zm00001d047471_T002:7 Zm00001d047471_T003:7 Zm00001d047471_T009:7 Zm00001d047471_T007:7 Zm00001d047471_T011:7 Zm00001d047471_T020:7 Zm00001d047471_T017:7 Zm00001d047471_T005:7 Zm00001d047471_T023:7 Zm00001d047471_T024:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.195987354 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
131199690-131197912(-) |
Potential amino acid sequence |
MQNKTGGSAPPDEEDVPDEEDPEEAQLKREALRAAQHAVSQQKMKTNAFDSEIVRLRQTSDSAL PTDDSSSMDPSKIDLLHPSTMPETSSVQTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEM GLGKTVQAMAFLSHLAEDKNIWGPFLVVAPASVVNNWAEELIRFCPDLKILPYWGPERMILRKN INPKRLYRRDASFHILITNYQILVNEEKLLRRVKWQYMVLDEAQAIKSSSSQRWKTLLSFNCRN RLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIEGHAEHGGALNEHQLSRLYELR KKEEKEAAEALKREEELREAKRQQHRLNFLLSQTELYSHFMQNKTGGSAPPDEEDVPDEEDPEE AQLKREALRAAQHAVSQQKMKTNAFDSEIVRLRQTSDSALPTDDSSSMDPSKIDLLHPSTMPET SSVQTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTVQAMAFLSHLAEDKNIWGP FLVVAPASVVNNWAEELIRFCPDLKILPYWGPERMILRKNINPKRLYRRDASFHILITNYQILV NEEKLLRRVKWQYMVLDEAQAIKSSSSQRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIM PTLFDSHEQFNEWFSKGIEGHAEHGGALNEHQLSRLYELRKKEEKEAAEALKREEELREAKRQQ HRLNFLLSQTELYSHFMQNKTGGSAPPDEEDVPDEEDPEEAQLKREALRAAQHAVSQQKMKTNA FDSEIVRLRQTSDSALPTDDSSSMDPSKIDLLHPSTMPETSSVQTPELFKGVLKEYQLKGLQWL VNCYEQGLNGILADEMGLGKTVQAMAFLSHLAEDKNIWGPFLVVAPASVVNNWAEELIRFCPDL KILPYWGPERMILRKNINPKRLYRRDASFHILITNYQILVNEEKLLRRVKWQYMVLDEAQAIKS SSSQRWKTLLSFNCRNRLLLTGTPIQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIEGHAEH GGALNEHQLSRLYELRKKEEKEAAEALKREEELREAKRQQHRLNFLLSQTELYSHFMQNKTGGS APPDEEDVPDEEDPEEAQLKREALRAAQHAVSQQKMKTNAFDSEIVRLRQTSDSALPTDDSSSM DPSKIDLLHPSTMPETSSVQTPELFKGVLKEYQLKGLQWLVNCYEQGLNGILADEMGLGKTVQA MAFLSHLAEDKNIWGPFLVVAPASVVNNWAEELIRFCPDLKILPYWGPERMILRKNINPKRLYR RDASFHILITNYQILVNEEKLLRRVKWQYMVLDEAQAIKSSSSQRWKTLLSFNCRNRLLLTGTP IQNNMAELWALLHFIMPTLFDSHEQFNEWFSKGIEGHAEHGGALNEHQLSRL(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |