Plant Circular RNA Database

Detail information of AT5G63160_circ_g.1

			
						 General Information
					
						CircRNA Name
						AT5G63160_circ_g.1
					
						ID in PlantcircBase
						ath_circ_045480
					
						Alias
						Ath_circ_FC3918, AT5G63160_C1
					
						Organism
						
							Arabidpsis thaliana						
					
						Position
						
							chr5: 25333948-25334687  JBrowse»						
					
						Reference genome
						
							TAIR10.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						CIRCexplorer, CIRI2
					
						Parent gene
						
							AT5G63160						
					
						Parent gene annotation
						
							BTB/POZ and TAZ domain-containing protein 1
							
						Parent gene strand
						-
					
						Alternative splicing
						
							AT5G63160_circ_g.2 AT5G63160_circ_g.3 						
					
						Support reads
						1
					
						Tissues
						root, leaf
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						AT5G63160.2:2
AT5G63160.3:2
AT5G63160.1:2

General Information
CircRNA Name	AT5G63160_circ_g.1
ID in PlantcircBase	ath_circ_045480
Alias	Ath_circ_FC3918, AT5G63160_C1
Organism	Arabidpsis thaliana
Position	chr5: 25333948-25334687 JBrowse»
Reference genome	TAIR10.38
Type	e-circRNA
Identification method	CIRCexplorer, CIRI2
Parent gene	AT5G63160
Parent gene annotation	BTB/POZ and TAZ domain-containing protein 1
Parent gene strand	-
Alternative splicing	AT5G63160_circ_g.2 AT5G63160_circ_g.3
Support reads	1
Tissues	root, leaf
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	AT5G63160.2:2 AT5G63160.3:2 AT5G63160.1:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							GACGCCTTTAGTGCACCGTTGCTTTAACTGAGTCACCATATACACGTGTGATAAAGCCAGTAGA
TGGATTCCGTATTTTTCCATCTCATTCTCCGTGACActgcaaagagggacacggcaagattcag
attggtcacaaatcgaagaatggagtctaaggagttgaatcattctcttgcatcggacacaacc
tttgccat

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 639
Transcript exons: 25333948-25334282,25334384-25334687
CTGCAAAGAGGGACACGGCAAGATTCAGATTGGTCACAAATCGAAGAATGGAGTCTAAGGAGTT
GAATCATTCTCTTGCATCGGACACAACCTTTGCCATCGACTCTTTTCTTGCATACTGCAAAGTG
ACGTATAAGAAGTTGAAGTCCGTAACAAGTCGAAAACGCACTGCATGGACCGGGTTTTGCTTGA
CATGTTGACTTGTTGTCTAAGTTAGACGATGGTCCGACCAGTGTGCAACCTTCGGTGCATATGT
GTTCTATACATTCCATGGCTTCACTCAGCTGCAAATACAGATTCTGTTCTCGTCTGTGTCTCCT
TCTTCTTTTCTTCCTCGATTCTGCATCGTCGATGAATTGGAGAATGTCAAGTTCAAGAAAAGGA
TCGTGTTCTTGAAGAAACTTCCATCCTTCTGTCTGTTCAACGGTCTTGAACTTGTAGTGAATGA
ATCGCATACACTTGAGACAGAGGTCAGGTGCGTCGCAGAGACGAGCCAGCTGGAGAATATCGAC
AACGTTTTCGGCGGTTACTCTCTCACCGACGCCTTTAGTGCACCGTTGCTTTAACTGAGTCACC
ATATACACGTGTGATAAAGCCAGTAGATGGATTCCGTATTTTTCCATCTCATTCTCCGTGACA
						
						Genomic sequence
						
							CTGCAAAGAGGGACACGGCAAGATTCAGATTGGTCACAAATCGAAGAATGGAGTCTAAGGAGTT
GAATCATTCTCTTGCATCGGACACAACCTTTGCCATCGACTCTTTTCTTGCATACTGCAAAGTG
ACGTATAAGAAGTTGAAGTCCGTAACAAGTCGAAAACGCACTGCATGGACCGGGTTTTGCTTGA
CATGTTGACTTGTTGTCTAAGTTAGACGATGGTCCGACCAGTGTGCAACCTTCGGTGCATATGT
GTTCTATACATTCCATGGCTTCACTCAGCTGCAAATACAGATTCTGTTCTCGTCTGTGTCTCCT
TCTTCTTTTCTTCCTCTGCAAGAAATTGACCCAAAAGAAACCTAATTCAATAAAACAGAGTTTT
CTTGAAGAACCAAAAAAAAAGAAAACAAAAAAGTGTGGTTTGAGTTAATTACCGATTCTGCATC
GTCGATGAATTGGAGAATGTCAAGTTCAAGAAAAGGATCGTGTTCTTGAAGAAACTTCCATCCT
TCTGTCTGTTCAACGGTCTTGAACTTGTAGTGAATGAATCGCATACACTTGAGACAGAGGTCAG
GTGCGTCGCAGAGACGAGCCAGCTGGAGAATATCGACAACGTTTTCGGCGGTTACTCTCTCACC
GACGCCTTTAGTGCACCGTTGCTTTAACTGAGTCACCATATACACGTGTGATAAAGCCAGTAGA
TGGATTCCGTATTTTTCCATCTCATTCTCCGTGACA

Sequences
Splice junction sequence	GACGCCTTTAGTGCACCGTTGCTTTAACTGAGTCACCATATACACGTGTGATAAAGCCAGTAGA TGGATTCCGTATTTTTCCATCTCATTCTCCGTGACActgcaaagagggacacggcaagattcag attggtcacaaatcgaagaatggagtctaaggagttgaatcattctcttgcatcggacacaacc tttgccat
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 639 Transcript exons: 25333948-25334282,25334384-25334687 CTGCAAAGAGGGACACGGCAAGATTCAGATTGGTCACAAATCGAAGAATGGAGTCTAAGGAGTT GAATCATTCTCTTGCATCGGACACAACCTTTGCCATCGACTCTTTTCTTGCATACTGCAAAGTG ACGTATAAGAAGTTGAAGTCCGTAACAAGTCGAAAACGCACTGCATGGACCGGGTTTTGCTTGA CATGTTGACTTGTTGTCTAAGTTAGACGATGGTCCGACCAGTGTGCAACCTTCGGTGCATATGT GTTCTATACATTCCATGGCTTCACTCAGCTGCAAATACAGATTCTGTTCTCGTCTGTGTCTCCT TCTTCTTTTCTTCCTCGATTCTGCATCGTCGATGAATTGGAGAATGTCAAGTTCAAGAAAAGGA TCGTGTTCTTGAAGAAACTTCCATCCTTCTGTCTGTTCAACGGTCTTGAACTTGTAGTGAATGA ATCGCATACACTTGAGACAGAGGTCAGGTGCGTCGCAGAGACGAGCCAGCTGGAGAATATCGAC AACGTTTTCGGCGGTTACTCTCTCACCGACGCCTTTAGTGCACCGTTGCTTTAACTGAGTCACC ATATACACGTGTGATAAAGCCAGTAGATGGATTCCGTATTTTTCCATCTCATTCTCCGTGACA
Genomic sequence	CTGCAAAGAGGGACACGGCAAGATTCAGATTGGTCACAAATCGAAGAATGGAGTCTAAGGAGTT GAATCATTCTCTTGCATCGGACACAACCTTTGCCATCGACTCTTTTCTTGCATACTGCAAAGTG ACGTATAAGAAGTTGAAGTCCGTAACAAGTCGAAAACGCACTGCATGGACCGGGTTTTGCTTGA CATGTTGACTTGTTGTCTAAGTTAGACGATGGTCCGACCAGTGTGCAACCTTCGGTGCATATGT GTTCTATACATTCCATGGCTTCACTCAGCTGCAAATACAGATTCTGTTCTCGTCTGTGTCTCCT TCTTCTTTTCTTCCTCTGCAAGAAATTGACCCAAAAGAAACCTAATTCAATAAAACAGAGTTTT CTTGAAGAACCAAAAAAAAAGAAAACAAAAAAGTGTGGTTTGAGTTAATTACCGATTCTGCATC GTCGATGAATTGGAGAATGTCAAGTTCAAGAAAAGGATCGTGTTCTTGAAGAAACTTCCATCCT TCTGTCTGTTCAACGGTCTTGAACTTGTAGTGAATGAATCGCATACACTTGAGACAGAGGTCAG GTGCGTCGCAGAGACGAGCCAGCTGGAGAATATCGACAACGTTTTCGGCGGTTACTCTCTCACC GACGCCTTTAGTGCACCGTTGCTTTAACTGAGTCACCATATACACGTGTGATAAAGCCAGTAGA TGGATTCCGTATTTTTCCATCTCATTCTCCGTGACA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.47163312

Conservation Information
Conserved circRNAs	NA
PMCS	0.47163312

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							25334672-25333950(-)
						
						Potential amino acid sequence
						
							MEKYGIHLLALSHVYMVTQLKQRCTKGVGERVTAENVVDILQLARLCDAPDLCLKCMRFIHYKF
KTVEQTEGWKFLQEHDPFLELDILQFIDDAESRKKRRRRHRREQNLYLQLSEAMECIEHICTEG
CTLVGPSSNLDNKSTCQAKPGPCSAFSTCYGLQLLIRHFAVCKKRVDGKGCVRCKRMIQLLRLH
SSICDQSESCRVPLCSVTENEMEKYGIHLLALSHVYMVTQLKQRCTKGVGERVTAENVVDILQL
ARLCDAPDLCLKCMRFIHYKFKTVEQTEGWKFLQEHDPFLELDILQFIDDAESRKKRRRRHRRE
QNLYLQLSEAMECIEHICTEGCTLVGPSSNLDNKSTCQAKPGPCSAFSTCYGLQLLIRHFAVCK
KRVDGKGCVRCKRMIQLLRLHSSICDQSESCRVPLCSVTENEMEKYGIHLLALSHVYMVTQLKQ
RCTKGVGERVTAENVVDILQLARLCDAPDLCLKCMRFIHYKFKTVEQTEGWKFLQEHDPFLELD
ILQFIDDAESRKKRRRRHRREQNLYLQLSEAMECIEHICTEGCTLVGPSSNLDNKSTCQAKPGP
CSAFSTCYGLQLLIRHFAVCKKRVDGKGCVRCKRMIQLLRLHSSICDQSESCRVPLCSVTENEM
EKYGIHLLALSHVYMVTQLKQRCTKGVGERVTAENVVDILQLARLCDAPDLCLKCMRFIHYKFK
TVEQTEGWKFLQEHDPFLELDILQFIDDAESRKKRRRRHRREQNLYLQLSEAMECIEHICTEGC
TLVGPSSNLDNKSTCQAKPGPCSAFSTCYGLQLLIRHFAVCKKRVDGKGCVRCKRMIQLLRLHS
SICDQSESCRVPLC(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						response to drought stress

Functional Information
Coding potential	Y
Potential coding position	25334672-25333950(-)
Potential amino acid sequence	MEKYGIHLLALSHVYMVTQLKQRCTKGVGERVTAENVVDILQLARLCDAPDLCLKCMRFIHYKF KTVEQTEGWKFLQEHDPFLELDILQFIDDAESRKKRRRRHRREQNLYLQLSEAMECIEHICTEG CTLVGPSSNLDNKSTCQAKPGPCSAFSTCYGLQLLIRHFAVCKKRVDGKGCVRCKRMIQLLRLH SSICDQSESCRVPLCSVTENEMEKYGIHLLALSHVYMVTQLKQRCTKGVGERVTAENVVDILQL ARLCDAPDLCLKCMRFIHYKFKTVEQTEGWKFLQEHDPFLELDILQFIDDAESRKKRRRRHRRE QNLYLQLSEAMECIEHICTEGCTLVGPSSNLDNKSTCQAKPGPCSAFSTCYGLQLLIRHFAVCK KRVDGKGCVRCKRMIQLLRLHSSICDQSESCRVPLCSVTENEMEKYGIHLLALSHVYMVTQLKQ RCTKGVGERVTAENVVDILQLARLCDAPDLCLKCMRFIHYKFKTVEQTEGWKFLQEHDPFLELD ILQFIDDAESRKKRRRRHRREQNLYLQLSEAMECIEHICTEGCTLVGPSSNLDNKSTCQAKPGP CSAFSTCYGLQLLIRHFAVCKKRVDGKGCVRCKRMIQLLRLHSSICDQSESCRVPLCSVTENEM EKYGIHLLALSHVYMVTQLKQRCTKGVGERVTAENVVDILQLARLCDAPDLCLKCMRFIHYKFK TVEQTEGWKFLQEHDPFLELDILQFIDDAESRKKRRRRHRREQNLYLQLSEAMECIEHICTEGC TLVGPSSNLDNKSTCQAKPGPCSAFSTCYGLQLLIRHFAVCKKRVDGKGCVRCKRMIQLLRLHS SICDQSESCRVPLC(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	response to drought stress

			
						 Other Information
					
						References
						Chu et al., 2017;Chen et al., 2017a;Zhang et al., 2019

circRNA

Detail information of AT5G63160_circ_g.1

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