Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT1G05350_circ_g.3 |
ID in PlantcircBase | ath_circ_000796 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr1: 1561953-1563503 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, KNIFE, PcircRNA_finder, circRNA_finder |
Parent gene | AT1G05350 |
Parent gene annotation |
Ubiquitin-like modifier-activating enzyme 5 |
Parent gene strand | - |
Alternative splicing | AT1G05350_circ_g.1 AT1G05350_circ_g.2 AT1G05350_circ_g.4 AT1G05350_circ_g.5 AT1G05350_circ_g.6 AT1G05350_circ_g.7 AT1G05350_circ_g.8 AT1G05350_circ_g.9 AT1G05350_circ_g.10 AT1G05350_circ_g.11 AT1G05350_circ_g.12 |
Support reads | 2 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT1G05350.1:7 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.152490876 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
1563459-1561955(-) |
Potential amino acid sequence |
MALQRMGIVDNYERIREFSVAIVGIGGVGSVAAEMLTRCGIGRLLLYDYDTVELANMNRLFFRP DQVGMTKTDAAVQTLAEINPDVVLESFTMNITTVQGFETFTSSLTNKSFCPSKEGGSGVDLVLS CVDNYEARMAVNQACNELRQTWMESGVSEDAVSGHIQLLVPGETACFACAPPLVVASGIDERTL KREGVCAASLPTTMELSSEVVDSNPYSRLMALQRMGIVDNYERIREFSVAIVGIGGVGSVAAEM LTRCGIGRLLLYDYDTVELANMNRLFFRPDQVGMTKTDAAVQTLAEINPDVVLESFTMNITTVQ GFETFTSSLTNKSFCPSKEGGSGVDLVLSCVDNYEARMAVNQACNELRQTWMESGVSEDAVSGH IQLLVPGETACFACAPPLVVASGIDERTLKREGVCAASLPTTMELSSEVVDSNPYSRLMALQRM GIVDNYERIREFSVAIVGIGGVGSVAAEMLTRCGIGRLLLYDYDTVELANMNRLFFRPDQVGMT KTDAAVQTLAEINPDVVLESFTMNITTVQGFETFTSSLTNKSFCPSKEGGSGVDLVLSCVDNYE ARMAVNQACNELRQTWMESGVSEDAVSGHIQLLVPGETACFACAPPLVVASGIDERTLKREGVC AASLPTTMELSSEVVDSNPYSRLMALQRMGIVDNYERIREFSVAIVGIGGVGSVAAEMLTRCGI GRLLLYDYDTVELANMNRLFFRPDQVGMTKTDAAVQTLAEINPDVVLESFTMNITTVQGFETFT SSLTNKSFCPSKEGGSGVDLVLSCVDNYEARMAVNQACNELRQTWMESGVSEDAVSGHIQLLVP GETACFACAPPLVVASGIDERTLKREGVCAASLPTTM(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |