Detail information of orai.002G141200_circ_g.1


General Information
CircRNA Name orai.002G141200_circ_g.1
ID in PlantcircBase gra_circ_000157
Alias Chr02:24705586|24709385
Organism Gossypium raimondii
Position chrChr02: 24705586-24709385  JBrowse»
Reference genome Graimondii_221
Type   e-circRNA
Identification method CIRI
Parent gene Gorai.002G141200
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads 2/8
Tissues leaf/ovule
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Gorai.002G141200.2:11
Gorai.002G141200.1:11
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACTTCCAAGATGTCATGAACACTACAGAGAAATATTAATAACTAAATACCTGAAATGTTACACC
CTTTTCAGTGATGTCAGCTAAATGCAGCAGTGAAACcattttctgcaaaaagttgcatacaaac
ctgcaacaagatattaagaacaatatatattcttaatataacatgaaaagaaatgagaaagaaa
aaagaaag
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATTTTCTGCAAAAAGTTGCATACAAACCTGCAACAAGATATTAAGAACAATATATATTCTTAA
TATAACATGAAAAGAAATGAGAAAGAAAAAAGAAAGCTGGACAAAGCAAAAGGCAAACATACTC
GGGAAACTTCCCTTGGACTATGGATGAGTGTAGATTTTTGCTAAGCTGAAATTGTCAAAAAATT
TACTCTCAATCATTCGAAATAAACAACACATGAAAGCAACAAAGCCTAAAACATAGAAACTTTT
AAGGTTGTACCTGCATCATATAGTATAAATTATGAAATGAAAGAAGCTGAGATCCCATAGCATC
TTTTGTGACCAGAGAATGAATGTAGGCCCTCGTATAGTTTTTGCAAACCTATATTTAGGCAAAT
AGAGTAATACACCAAGAAGTCAATTCATATATTAACAATTTTAAGCAAATATGTCATGAAATGC
ATACCATACAAGCACATGTAGGATCAATAGGGCGAGTATCCTCAGCCATTGCCCTGTGCTTGAG
TTTAAGCACTCCCTGCAAATAGGTGATTGAATAACATCAGAATACTACATTCATATTTAAAATA
AAAGTTGGGTGTAATTAATACTCTTTAGGTTCACATTCTAACTTGTTAAAATTCAAAACAAAAA
TATCAATTCATTAAGGGGTGAAGTTATGAGACCAAACTTCTAGCATTACCATACTATGTTCACC
TAGAGACTCGAATGTTAGCATTGGATACAGGTATTCGATTTACTTTAAGTTTTTCCATGAATTT
GGAGGGACCTTGAAGAGTCATATCCCCATATACATGTCTAAAAATGTGTTGGGCATAGGTGTTA
AGACATACTTGTTCACTTCAAGAAAAATGAAGAGCCAAACCAACATAGGTTGTAAATACAAGAA
TGAACAAAACATGCAAGGTACAAGTTATAGTAACGCCATTCAACGAGAAAAGACTAGTCATACT
AGAAGGCAAACAGAAAAAAAGGCATGTTGTGGCTTGGTGCCATAAACACCATTCATATGTAAAG
TTAAACCAAATGATATTATGGCACTCAATGAACAAGATTGGGAACACTGACTCTCAAAATACTT
TTTAAATGTATCACCTCAGGGACAAGGGCAGTTCCAAAACGAGCAGTTCGAGTCGGATAAACAC
AGTCATACATGTCAGCACCCAAGGCACTACAGACCACAATATCCAGTGGATACCCAACACCCTG
AAATGAAGCAAGCACACATAATGATTTACAGCAACATAAATGGATAAAAGAAGGTAAAATTCGT
CAGAATGATGTAGATTAAAATGAAAAAACTCATTTTTACCATGACATATCGTGGTTTATCTTCA
GGCAGTGTCGCAGTACACTGAGCAACAACACGCCAAAATGAATCTTTATCTTCACCGCCTGCAA
GACCACCAATAGCATAGCTGTCACACAAGTGAACTTAAGTTAATTCAGCTTGTAAACTGAATCT
TTATACAGTTGGCAAAACACTAACAGTAAAGAAAATCTAGCAATTATGATTGTTAACAACAAAA
AGAGAGTTCAAACAGAAACTGGCATGGGTATTCACAATACCAGTCAACAAGGCTCTAACAGCAT
CTTTTTTGAGAATAATAATGCTGGGAATCAGAGATCTAGATGTTGGAGTTGCATTTTCTTAAAT
AACCAATCATTTTATAAGCTAAAAGTAACACCAACCTTTTACATTCTAGCCCTAGAAACGGATT
TAGATATTGAAATTCAATGTGGAAAATTTCAGTTGCAACTTGCTAAAACAATATATTCAAATGG
AACTTAACAAGAATGGGACACTATTCCTTGAAATTGTAAAATCAATGTTGTACAAAAATATCCA
CGAAGGAAATATAGCATGAGAAGGACACTATCCCTTGATCATCTGCTTAAATAATAAATCATTC
TGCCATCAAATTAACCTTTTATTTTATAGTCCTAGAAAATAACTTGGATATTGAAATGCTATGT
GGAAAATTACATAGCAACTTGCTAAAGTATGAACATCAAGATCAGATCATCCGCTATAGAGTAT
CTTCAAAGGAAACATAGCATGAGTAGGACAATATTTGTGTATATAGAATGCACATACCCTGGTA
AATTTCGATCCACCAATCCTCGAACACATATATCCCTGATAAAAATGAGCATCAGGAAAGGGAA
AAGTTGCCCACAGTATCATTAGTAATTGAAAAGGGGTAAAACACACATCAAATAGCATGGTTGC
GATATGAAGATCAGAGATTCACCTTAGTACTGGATCTAAACCACCTTGTACTATACCAAACAAA
TTCTGGTCATGTGGCCTTTTATGAGCTGTCCATAAGATTAAGGCAGCAAAAAGAACCTAACTCA
ATCAGAATGTCACTATTAAGAGAATAACAACATTACTGATAAATAACAATTATTTAAAGGAGAA
AGAGGAGAGGAGTGAAGTGGAACACCAGAAAGAGGTATGGTTAAATGGCTGATGGATCCAAGTG
CAGAAGGTAAAAGTTGATATTTAATAAATTAAATGACATTCAACGATAACATTGTGTTGCTTTG
TATGATTATATTTATAACACACTGTATAAGCATTTTTAAAAAACTTCAAAAGTTATGTATACAA
GCTTGATAAAAGATAATCCACTCCAACAAGCTAGAGGACAGGCAGACAAGGCAAAATACTTATT
TAAAGCTCAAAGATTGGTAAATAATATGATTTTAAGCCAAACGGTTAATATTTCCATGCAAGAA
CCGTGAGCGAGCGTTGTTCAGTCTTAAGCATAATTACCAGCTATGCATCTGTCTATCCAGCGGA
GGGTACGATACATGGCCTCTTCAATTCGTGGACCAGTAATAGTAGTTTTCACCACATCATCAAG
AGCCATTATTATATCTGCTCCAATTCTATTCTGTATAATTGTTAGGAGAAGATAAAGTTAAAAT
GGAATATTCAGAACATATAGAGACAATAAGCCCAAGAAACATTTAGGATTTATCCTATAGTTAA
AATGGAATATTCAAAACATATAAAGACAATAAGCCTATTAAACATTTAGGATTTTATCCTATGT
CTCTTGGTTACTGTTAAGGGATAAAAGAGTATGGGTTCAGGGATAAAAAGGTGAAGGCACATAA
TTCTGTTAATATATATACAAAGGCAAAAAGGTTCTCATAGCAAGTGATCCTTAACTTTTGCTAG
ATCTTTATACTGCTAATAACCACTTAAGTGAAACTATCACAAATATCATGTACTGAGAGTAAAA
AATCTGAGTAAATTACACTATGAATCATTTGAAGAACAAGCACCCCTTATTTATCCAAAAGTAA
TCTTTATGAAATCTCAATTCATGGCTTAAAAGAGACACTTATTTGGTTGAAAAGGGAACCAAGA
ATAACAAAACACCTCCTCTCATCCCAGTAATATGAGTCAGTGTTGCAAAAGTTAGGGGGAAGAA
AGAATAACTTTTAGTTTTTACCAAAAACATAATATAACAACAATTACCAAAGTACACTAAAATA
AAGCACCTACTTGGATTTGAATAGATTCCTCTGGTGTTAGGAGCATTGGCTTTCCATCCACTGG
AGACTGAGTTAAGAAACATGAAGCCTTTTAAAAGTAAAACATCACAAAAACAAGAAAGAAGTAA
CAAGAAAAGGGTATGCTTCCAGCTGATACTTAAGCAGATTATTATACTAATTACTTCCAAGATG
TCATGAACACTACAGAGAAATATTAATAACTAAATACCTGAAATGTTACACCCTTTTCAGTGAT
GTCAGCTAAATGCAGCAGTGAAAC
Conservation Information
Conserved circRNAs NA
PMCS 0.114753327
Functional Information
Coding potential Y
Potential coding position 24709152-24705588(-)
24709360-24705861(+)
Potential amino acid sequence MLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTLRWIDRCIAAHKRPHDQNLFG
IVQGGLDPVLRDICVRGLVDRNLPGYAIGGLAGGEDKDSFWRVVAQCTATLPEDKPRYVMGVGY
PLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHRAMAEDTRPIDPTCACMVCKNYTR
AYIHSLVTKDAMGSQLLSFHNLYYMMQLSKNLHSSIVQGKFPEFVCNFLQKMVSLLHLADITEK
GVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTLRWIDRCIA
AHKRPHDQNLFGIVQGGLDPVLRDICVRGLVDRNLPGYAIGGLAGGEDKDSFWRVVAQCTATLP
EDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHRAMAEDTRPIDP
TCACMVCKNYTRAYIHSLVTKDAMGSQLLSFHNLYYMMQLSKNLHSSIVQGKFPEFVCNFLQKM
VSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAM
YRTLRWIDRCIAAHKRPHDQNLFGIVQGGLDPVLRDICVRGLVDRNLPGYAIGGLAGGEDKDSF
WRVVAQCTATLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKH
RAMAEDTRPIDPTCACMVCKNYTRAYIHSLVTKDAMGSQLLSFHNLYYMMQLSKNLHSSIVQGK
FPEFVCNFLQKMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVK
TTITGPRIEEAMYRTLRWIDRCIAAHKRPHDQNLFGIVQGGLDPVLRDICVRGLVDRNLPGYAI
GGLAGGEDKDSFWRVVAQCTATLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGT
ALVPEGVLKLKHRAMAEDTRPIDPTCACMVCKNYTRAYIHSLVTKDAMGSQLLSFHNLYYMMQL
SKNLHSSIVQGKFPEFVCNFLQKM(-)
MSAKCSSETIFCKKLHTNSGNFPWTMDECRFLLSCII*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017b