Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | orai.002G141200_circ_g.1 |
| ID in PlantcircBase | gra_circ_000157 |
| Alias | Chr02:24705586|24709385 |
| Organism | Gossypium raimondii |
| Position | chrChr02: 24705586-24709385 JBrowse» |
| Reference genome | Graimondii_221 |
| Type | e-circRNA |
| Identification method | CIRI |
| Parent gene | Gorai.002G141200 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | 2/8 |
| Tissues | leaf/ovule |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Gorai.002G141200.2:11 Gorai.002G141200.1:11 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.114753327 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
24709152-24705588(-) 24709360-24705861(+) |
| Potential amino acid sequence |
MLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTLRWIDRCIAAHKRPHDQNLFG IVQGGLDPVLRDICVRGLVDRNLPGYAIGGLAGGEDKDSFWRVVAQCTATLPEDKPRYVMGVGY PLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHRAMAEDTRPIDPTCACMVCKNYTR AYIHSLVTKDAMGSQLLSFHNLYYMMQLSKNLHSSIVQGKFPEFVCNFLQKMVSLLHLADITEK GVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAMYRTLRWIDRCIA AHKRPHDQNLFGIVQGGLDPVLRDICVRGLVDRNLPGYAIGGLAGGEDKDSFWRVVAQCTATLP EDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKHRAMAEDTRPIDP TCACMVCKNYTRAYIHSLVTKDAMGSQLLSFHNLYYMMQLSKNLHSSIVQGKFPEFVCNFLQKM VSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVKTTITGPRIEEAM YRTLRWIDRCIAAHKRPHDQNLFGIVQGGLDPVLRDICVRGLVDRNLPGYAIGGLAGGEDKDSF WRVVAQCTATLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGTALVPEGVLKLKH RAMAEDTRPIDPTCACMVCKNYTRAYIHSLVTKDAMGSQLLSFHNLYYMMQLSKNLHSSIVQGK FPEFVCNFLQKMVSLLHLADITEKGVTFQSPVDGKPMLLTPEESIQIQNRIGADIIMALDDVVK TTITGPRIEEAMYRTLRWIDRCIAAHKRPHDQNLFGIVQGGLDPVLRDICVRGLVDRNLPGYAI GGLAGGEDKDSFWRVVAQCTATLPEDKPRYVMGVGYPLDIVVCSALGADMYDCVYPTRTARFGT ALVPEGVLKLKHRAMAEDTRPIDPTCACMVCKNYTRAYIHSLVTKDAMGSQLLSFHNLYYMMQL SKNLHSSIVQGKFPEFVCNFLQKM(-) MSAKCSSETIFCKKLHTNSGNFPWTMDECRFLLSCII*(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhao et al., 2017b |