Detail information of Os03g0350300_circ_g.1


General Information
CircRNA Name Os03g0350300_circ_g.1
ID in PlantcircBase osa_circ_019808
Alias Os_ciR817
Organism Oryza sativa
Position chr3: 13133934-13134062  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method find_circ
Parent gene Os03g0350300
Parent gene annotation Similar to SAR DNA-binding protein-like protein. (Os03t0350300-0
1)
Parent gene strand -
Alternative splicing Os03g0350100_circ_ag.1 Os03g0350100_circ_ag.2 Os03g0350100_circ_ag.3 Os03g0350100_circ_ag.4 Os03g0350100_circ_ag.5 Os03g0350100_circ_ag.6 Os03g0350300_circ_g.2 Os03g0350300_circ_g.3 Os03g0350300_circ_g.4 Os03g0350300_circ_g.5
Support reads 36
Tissues root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os03t0350300-01:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCAGCATCGGCCGCAGGAGATTCCTCGCTCTCTTTGGACTTCTTTTTCTTCTTTTTCTTTTCAC
cttctgtagtggccactggaggttcctcgctctccttggacgtctttttctttttcttgccacc
g
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 129
Transcript exons: 13133934-13134062
CTTCTGTAGTGGCCACTGGAGGTTCCTCGCTCTCCTTGGACGTCTTTTTCTTTTTCTTGCCACC
GTCAGCATCGGCCGCAGGAGATTCCTCGCTCTCTTTGGACTTCTTTTTCTTCTTTTTCTTTTCA
C

Genomic sequence CTTCTGTAGTGGCCACTGGAGGTTCCTCGCTCTCCTTGGACGTCTTTTTCTTTTTCTTGCCACC
GTCAGCATCGGCCGCAGGAGATTCCTCGCTCTCTTTGGACTTCTTTTTCTTCTTTTTCTTTTCA
C
Conservation Information
Conserved circRNAs NA
PMCS 0.54276686
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015