Detail information of Solyc04g009800.2_circ_g.2


General Information
CircRNA Name Solyc04g009800.2_circ_g.2
ID in PlantcircBase sly_circ_001291
Alias NA
Organism Solanum lycopersicum
Position chr4: 3109144-3112674  JBrowse»
Reference genome SL2.50.38
Type   e-circRNA
Identification method CIRI
Parent gene Solyc04g009800.2
Parent gene annotation Calcium dependent protein kinase
Parent gene strand -
Alternative splicing Solyc04g009800.2_circ_g.1
Support reads 6
Tissues fruit
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Solyc04g009800.2.1:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACACCAGCACTCCAAACATCAGCTTCAGGACCATACCGCTTTTTGAGAACTTCCGGTGCAACAT
AATAAGGACTACCAACAACATCAGTAAATCTCTCACattgtcctgatcagcatctctgatcata
tcttccaggtggacgtcaccgatgccaaattcctcacaagcttgttgaagctcgtctgcggtga
tgtagcca
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 806
Transcript exons: 3109144-3109368,3110315-3110482,3110577-3110692,3111367-
3111519,3112531-3112674
ATTGTCCTGATCAGCATCTCTGATCATATCTTCCAGGTGGACGTCACCGATGCCAAATTCCTCA
CAAGCTTGTTGAAGCTCGTCTGCGGTGATGTAGCCACTTCCATCTTTATCAAAGTAAGAGAAAG
CAGCAAATAGATGATCTTCTCTTTCAATTTTGTTGAAATGTAATGTTGCAGCTATAAATTCCCC
ATAGTCAATTGTGCCGCTGTTATCAACATCTGCTGCTTGCATAAGATCATAGATCTCGGATTCC
TTGAGATTAGCGCCAACTCTTTTTAAACCAACTTTGAGCTCCTCAAAAGTTATTTGACCACTAT
TGTCTGTATCAATCATCTTGAACATTTCTTTCAGACCGGCAATTTCTTCTTCAGACAGGCTTTC
AGCAATGACTCTCAAAGCCATCTTCTTGAGCTTGTTCATTGCAGAAAATTGTTTCATTCGACTT
AGAACTGCAGAATCCAAAGGCTTATCTGGAGCCACACCATCAACTTGAACCCAGCGATGGCACA
AGACTTCATGAGCAGTCAAACGTTTTTTGGGATCTCGAACAAGCATTCCCCTAACTAAGTCTTT
TGCATCTTCTGAAATACTAGGCCATGGATCTGACGAGAAATCGAGATCACCATGCAGGACTTGT
TCAAATATCCCTTGCTCATTTTCAGCCCAGAAAGGAGGCACTCCACTTAACAAGATGTAAACAA
TCACACCAGCACTCCAAACATCAGCTTCAGGACCATACCGCTTTTTGAGAACTTCCGGTGCAAC
ATAATAAGGACTACCAACAACATCAGTAAATCTCTCAC

Genomic sequence ATTGTCCTGATCAGCATCTCTGATCATATCTTCCAGGTGGACGTCACCGATGCCAAATTCCTCA
CAAGCTTGTTGAAGCTCGTCTGCGGTGATGTAGCCACTTCCATCTTTATCAAAGTAAGAGAAAG
CAGCAAATAGATGATCTTCTCTTTCAATTTTGTTGAAATGTAATGTTGCAGCTATAAATTCCCC
ATAGTCAATTGTGCCGCTGTTATCAACATCTGCCTGCAATTTCGGACAAAACGAGGAGTTACAT
GAGGTCACTATCAAATTGGTTAAGCATGAGATGTAAGAATGTCATGACGCTAAACGAATCTTAA
GATTTAGGTTTATACAATTAGAAACCAACATAGAGAAAAGAGGATATTCGAAGGCTAAATCGTT
CCGTCTTGCTTCTTGCCCACATTGACTAGATCAAATGTAAGCTGACGAGCACAATTTTTATTTC
CAATTGACTAATATTAGCTTTCATACAATCCCCTTCACCTTTTAGCAATCGAACTCCCAAATAT
ACCCGTCAGGCGAAATTTACTAATTGAGGCTAGTTGTTGTTATTGTAATTCTCAACAATCTATC
CAACTACTGCATATACACAAATAATTTCCTTAGACCAAAAAATACAAGTAAGAAACAAGGGAAC
TTTTAAGTTTCTATGTGGGTCTTCCGTTTAAAATGGTAACAATATATATTTCACTAGCATTAAG
GAAGTATTGGATACCATATTTTTACAATTCGTCTTAGCAAAAACAGAAGAAATACATTCACTTG
TTCATTTTGTTACTTCCTTTGGGTAAAGAAGAGGTCGCGTAAGTAATTAACTAATTATTTTCAT
CATTATTATGACATAGGCATACATTGTTGTTATTTTTCTCCGGTGTACACATTTCTTCACATGA
TACAAATGGCATTGAGAAATTAGCAATGATCTTTCGTGAGGAACATTTGGAGGAACTTACGAAA
CTAATAATGAAAGATCTTAAATACTTCCTCCCATTTTTGTTGTCCCTCAAACACATAAATCATG
TTTCTTCATTCTTATTGCGAGATCAAAATCTTACTGAAAACGGGATATTAATTAGCTTATTTAG
ATGATTCTACCCATGAAGGTTCTTAGCTTGACTTGAACTGAAATATCTATCTACCAAGGTCCAC
TTGACATAAGATCACTTACTGCTTGCATAAGATCATAGATCTCGGATTCCTTGAGATTAGCGCC
AACTCTTTTTAAACCAACTTTGAGCTCCTCAAAAGTTATTTGACCACTATTGTCTGTATCAATC
ATCTTGAACATTTCTTTCAGACCGGCAATTTCTTCTTCAGACAGGCTTTCAGCAATGACCTGCA
AGAGACACGTAATTCACAATATTAAGCAGATTCATTTCAATCCACAGTTTGTATGATTCTCGGA
TGTATTTGTGAATCTATAGACTCACTCTCAAAGCCATCTTCTTGAGCTTGTTCATTGCAGAAAA
TTGTTTCATTCGACTTAGAACTGCAGAATCCAAAGGCTTATCTGGAGCCACACCATCAACTTGA
ACCCAGCGATGGCCTGCGGAGGTATCAAAATCACCCATTAACTTTTATCCAAATTCTTCATCTT
GAGGGAAATTTTTGCAATAGGAAGGGGATTAAATTAATTTCATAGGATTCTAGCAATACAAAAT
ATTAACCACAAGGGCAGAGTTTAACTTTCTCCATTACATTAGCACTATTACATGATCAATTATG
AAATAGACTATATGATAGAGGAAATTTTACTGAGTATTCAGTATTGGAATAAAACAAGCGGAAT
TACAGCACAATGATGCACTCCCTTTGTTTCAATTAATTTGTCTGCTTTGACTTGGCACAAAGTT
TAAGGAAGTAGAGAAGACATTTGAACCTTGTGGTCTTGAACATGTCATGTTGAAAGTTAGAATT
GAAGAGCAGCTAAAAAAGGAAAGAAACATTCTTTTTCAGAGGGACTGAAAAGGAAAGTAAATAA
ACAAATTGAAATGGAGGGAATTGTACTCATATAGCCAGCCTCACTCACAGCCTATAAGAATCTT
TATTGTTAGCATATGAATTATACCTTTCCTCTTCTCGCTACTACTTACTATTACTAGTGAATTA
CCAATGTAGAATGTAAAACCATTTCCCACTAAAATTTAACCCACCATCATTTAAACAGGTAGAC
TTGTTAAACTCAAATATCAGATAGGACAAACTGTTGAGAATACTTACACAAGACTTCATGAGCA
GTCAAACGTTTTTTGGGATCTCGAACAAGCATTCCCCTAACTAAGTCTTTTGCATCTTCTGAAA
TACTAGGCCATGGATCTGACGAGAAATCGAGATCACCATGCAGGACTTGTTCAAATATCCCTTG
CTCATTTTCTGTATAATATTATATATTAGTAAAGAGAAATCATACGAAAAGATAAGACATCATT
GGCAGAGCTACATTTGGTTTCCAACAAAAAACTTTCACTTTCTTTCCCTTGCTGACAAAACTGG
TTTAGTTTATGGAAATAGATCTGATTTTGAATATGCAGTTATTCTTTTTATATAAAGTGCATGC
ATATAAAGGAAGTTCCCAATTTTCTGGTGATTGCCCTCGACGCCTTAAGGGTCAGCAGCAGCAG
TTGACACAAAGGTAGCAAGAACTATGGAAATCTCAGCTGATCACAAGAAGAAGTTAGCTTTGGG
CTCCCATGGCCATAATCGCTCGGTCATGTGGGATGGCACATGCAACACAGTGAAACTTGAAAAT
TGACTTGTGGATCGTGGTAATGGTATTCTGGTACTTAATTAAAGGGGTGATCTTGGATTGTGGT
GATCGACCGTGTGAAACTTAGTTCAAGGGGGAAATTGTTGGGTGTGCGATCATAGTCCCTCATT
GGAAGGTGAAAAATGTCGGGAACTACATATAAGGTGTAGGGATATTCTTAATGGGGTGAGCTTT
TTCGGGAAAAATCAATCAGGTTTGGCTCAAAATGGACAATATCACACCAAGTTGAAATATTACT
ATTCATGAAAGGAATCTTGTGACAGGATCCTATCAAGTATCAATTAAATGGTAATATGATTATG
GTAGCGCTAGCCCCACGATTCGAGGTCCCGGGAAATGGAGTATTCAAACTAGGAGTTCCCCCAA
AGCTTTGAGAATATCATATCATCTTTTTCAGCAAAATTAACACAGCACGAAATTTTCCTCTAGG
ATATTTTGACAAGACCTCGGCATTCTCGCTTATGTTATTAAGTCTCACTAGTCTTCCGGGTCTT
GGGCCTATTACCAGAGATCCCATTAATATGGTAGGCTTTGATGATCACCGAGATAATTTTGGAG
AATTGAACAGAGAGAATTGCAAAAAAAAAGTAAAGAAAACAAGTATCCTCAAATCTCACCAGCC
CAGAAAGGAGGCACTCCACTTAACAAGATGTAAACAATCACACCAGCACTCCAAACATCAGCTT
CAGGACCATACCGCTTTTTGAGAACTTCCGGTGCAACATAATAAGGACTACCAACAACATCAGT
AAATCTCTCAC
Conservation Information
Conserved circRNAs NA
PMCS 0.569292092
Functional Information
Coding potential Y
Potential coding position 3111417-3112575(-)
Potential amino acid sequence MLVRDPKKRLTAHEVLCHRWVQVDGVAPDKPLDSAVLSRMKQFSAMNKLKKMALRVIAESLSEE
EIAGLKEMFKMIDTDNSGQITFEELKVGLKRVGANLKESEIYDLMQAADVDNSGTIDYGEFIAA
TLHFNKIEREDHLFAAFSYFDKDGSGYITADELQQACEEFGIGDVHLEDMIRDADQDNVRDLLM
LLVVLIMLHRKFSKSGMVLKLMFGVLV*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zuo et al., 2016