Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Os01g0629900_circ_g.3 |
ID in PlantcircBase | osa_circ_002795 |
Alias | Os_ciR5932 |
Organism | Oryza sativa |
Position | chr1: 25154476-25156696 JBrowse» |
Reference genome | IRGSP-1.0.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, find_circ |
Parent gene | Os01g0629900 |
Parent gene annotation |
Similar to Blast and wounding induced mitogen-activated protein kinase. (Os01t0629900-01);Similar to Mitogen-activated protein k inase 10. (Os01t0629900-02);Similar to Mitogen-activated protein kinase 10. (Os01t0629900-03);Similar to Mitogen-activated prote in kinase 10. (Os01t0629900-04) |
Parent gene strand | - |
Alternative splicing | Os01g0629900_circ_g.1 Os01g0629900_circ_g.2 Os01g0629900_circ_g.4 Os01g0629900_circ_g.5 |
Support reads | 2/2 |
Tissues | root/root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Os01t0630000-00:5 Os01t0629900-02:1 Os01t0629900-01:5 Os01t0629900-03:1 Os01t0630000-00:5 |
Conservation Information | |
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Conserved circRNAs | osi_circ_010377 |
PMCS | 0.203349418 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
25156452-25154478(-) |
Potential amino acid sequence |
MLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKP KNILANSNCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIG CIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSMDTISRVRNDKARRYLSSMRKKEPILFSQKF PSADPLALDLLQKLLAFDPKDRPTAEESSTEADFFTEYGDASRYKIQEVIGKGSYGVVCSAIDV HTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELM ESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANSNCKLKICDFGLA RVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVV HQLDLMTDLLGTPSMDTISRVRNDKARRYLSSMRKKEPILFSQKFPSADPLALDLLQKLLAFDP KDRPTAEESSTEADFFTEYGDASRYKIQEVIGKGSYGVVCSAIDVHTGEKVAIKKIHDIFEHIS DAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHY QFFLYQLLRALKYIHTANVYHRDLKPKNILANSNCKLKICDFGLARVAFNDTPTTIFWTDYVAT RWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSMDTIS RVRNDKARRYLSSMRKKEPILFSQKFPSADPLALDLLQKLLAFDPKDRPTAEESSTEADFFTEY GDASRYKIQEVIGKGSYGVVCSAIDVHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPD IVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANV YHRDLKPKNILANSNCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPA IDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSMDTISRVRNDKARRYLSSMRKKEP ILFSQKFPSADPLALDLLQKLLAFDPKDRPTAEE(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ye et al., 2015;Chu et al., 2017 |