Detail information of Os01g0629900_circ_g.3


General Information
CircRNA Name Os01g0629900_circ_g.3
ID in PlantcircBase osa_circ_002795
Alias Os_ciR5932
Organism Oryza sativa
Position chr1: 25154476-25156696  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os01g0629900
Parent gene annotation Similar to Blast and wounding induced mitogen-activated protein
kinase. (Os01t0629900-01);Similar to Mitogen-activated protein k
inase 10. (Os01t0629900-02);Similar to Mitogen-activated protein
kinase 10. (Os01t0629900-03);Similar to Mitogen-activated prote
in kinase 10. (Os01t0629900-04)
Parent gene strand -
Alternative splicing Os01g0629900_circ_g.1 Os01g0629900_circ_g.2 Os01g0629900_circ_g.4 Os01g0629900_circ_g.5
Support reads 2/2
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Os01t0630000-00:5
Os01t0629900-02:1
Os01t0629900-01:5
Os01t0629900-03:1
Os01t0630000-00:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGAGCACACCACCCCATAGCTTCCCTTACCAATAACTTCCTGAATCTTGTATCGACTTGCATC
GCCATACTCCGTGAAAAAATCCGCCTCTGTAGAACTctcttcggcagttggacggtcctttgga
tcgaatgctaatagtttttgtagaagatccaacgccaaaggatctgcactaggaaacttctgcg
aaaatagg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 903
Transcript exons: 25154476-25154631,25154726-25154875,25155375-25155434,25
155542-25155669,25156288-25156696
CTCTTCGGCAGTTGGACGGTCCTTTGGATCGAATGCTAATAGTTTTTGTAGAAGATCCAACGCC
AAAGGATCTGCACTAGGAAACTTCTGCGAAAATAGGATTGGCTCCTTCTTTCTCATGCTACTCA
GATACCTCCTTGCTTTGTCATTCCGGACCCGAGAAATTGTATCCATGGATGGCGTGCCCAGAAG
ATCAGTCATCAAATCTAATTGATGGACAACATTTTTACCAGGAAATAAAGGCTTTCCTGTCAGC
ACCTCAGCAAAGATGCATCCAATGCTCCAAATGTCAATGGCTGGTGTATACTTTGAAAAGAAGG
ATCCACAGAGCTCTGGAGCCCTGTACCATCTTGTTGCAACATAATCCGTCCAAAAGATTGTTGT
CGGAGTATCATTGAATGCAACTCGCGCCAGTCCAAAATCACAAATTTTCAGTTTGCAGTTGGAA
TTAGCTAATATATTCTTCGGCTTCAGGTCCCGGTGATAAACATTAGCAGTGTGAATGTATTTCA
GAGCCCGGAGTAGTTGGTAAAGAAAGAACTGATAATGCTCCTTCGTCAAGTCATCATTAGCCTT
TATAACTTGGTGAAGATCAGACTCCATAAGCTCAAAAACTACATAAATATCTTTGAAATCCCTC
CTCGATGGAGGCAACATAATGTGCTTGATCTCAACTATGTCAGGATGTCTTAGCAGCCTCAGAA
GCTTGATCTCACGGAGAATCCGTGCAGCATCAGATATGTGTTCAAAGATATCGTGTATCTTCTT
GATTGCCACTTTCTCTCCAGTGTGGACATCTATCGCTGAGCACACCACCCCATAGCTTCCCTTA
CCAATAACTTCCTGAATCTTGTATCGACTTGCATCGCCATACTCCGTGAAAAAATCCGCCTCTG
TAGAACT

Genomic sequence CTCTTCGGCAGTTGGACGGTCCTTTGGATCGAATGCTAATAGTTTTTGTAGAAGATCCAACGCC
AAAGGATCTGCACTAGGAAACTTCTGCGAAAATAGGATTGGCTCCTTCTTTCTCATGCTACTCA
GATACCTCCTTGCTTTGTCATTCCGGACCTGAGAATAGATTGCCAATGTCAACCTTCCATAACT
TAGGTGATACCCAGCAGATAATCAACAGAAGGTTTCCCTGAAAGAATAAGTATCATACCCGAGA
AATTGTATCCATGGATGGCGTGCCCAGAAGATCAGTCATCAAATCTAATTGATGGACAACATTT
TTACCAGGAAATAAAGGCTTTCCTGTCAGCACCTCAGCAAAGATGCATCCAATGCTCCAAATGT
CAATGGCTGGTGTATACTGCAATTTTGTTGAGAATAAATTAACTAATACTACACAGAAAAAATT
ATCATATTTACATGGTTCAATATTGTCTACACTTCTAAAAAGAGTTGGAGACGACTGTATGCTC
TATCTCCATACCACACCCCAGGAGATGTTATATGGCTAGATTTATGTATACATGTGTGTTGTTT
GCAAGATGTTTTACAAAAATTACATTCTTTGAGCGTATGCACATATAGGTGGTCGGTTGAAATC
GAGTAGTCATGAGTATAAATTGCTAAACTTTAGATTTTTACTTTTGCGTTTCTAATTTTAGATC
TTACAGAATACTTATTTGGTATCCATCAGGCCATCACAATGAATGTGCGGACACGATTCCCAGT
CAACCAAATACATATAAGATGGCAGTATAGCATCATTGACCTCTCCTAGTCTTAGCCAAATTAA
AACCAAGAATGATATAGTCCATAGCCAACTTAAAACCAAGAATGCTATAGTCCAGCACAAAACT
TACCTTTGAAAAGAAGGATCCACAGAGCTCTGGAGCCCTGTACCATCTTGTTGCAACATAATCC
TGCAGGCAAATGAAGAGACATCAGAGGTGATCCGCGTACACAAATAAGCCAGAAGCCAAAGGTT
TAGACAAAACTAAGTTAAAGATAGATATTTCCATGAGCATACCGTCCAAAAGATTGTTGTCGGA
GTATCATTGAATGCAACTCGCGCCAGTCCAAAATCACAAATTTTCAGTTTGCAGTTGGAATTAG
CTAATATATTCTTCGGCTTCAGGTCCCGGTGATAAACATTAGCTGCAGTCACGTGGACTTAGTA
TAAGCAAAGCTTGCAAAAGGAAAAAGTAGCACATCTGCATAGAACATTTATGCACATTCTGCTG
ATAAGAGAATTGGAAAAATGGTAGTGTTGTTCAGAGATTACAGCATAAGCAACCAACCAATATG
CAAGTCATAAGCAGATTATTTAATACAAGAACTCTAAAATAATGAGGAAGTAACACATTATCTA
TCAAGAATACCTGGGATCCTGCGCATTTTCTACCCTTAAAGGTTGCAAAAACAGAGTGATCTTT
TTGAAGCATTGAATTCAATAGGGCCCCAATAGGGCCCATATGTTTTGCACCTCTCCCCATACCC
ACCCAAGGCACTTGTTGACACTTGAGACCAGTTGTTTTACGCTATAAATCTGCAAATCATGCTA
ATCCCATAATTTTATATGGAAATTGCATGAATATCCTACAAGAATCTTACGTAGTACACTAACC
AAAAAGGAAGGTATCCAAAGGTAATAATAATATATCTAATCAGGAGACACTGACTCAATGCAGG
TTCACTAGAGCACATACATTGTGTGATTCACGTTACATATGATCTTCAAAGCAAAACAATGGAC
TGAAAGTGACAGTTCCCTACCAGTGTGAATGTATTTCAGAGCCCGGAGTAGTTGGTAAAGAAAG
AACTGATAATGCTCCTTCGTCAAGTCATCATTAGCCTTTATAACTTGGTGAAGATCAGACTCCA
TAAGCTCAAAAACTACATAAATATCTTTGAAATCCCTCCTCGATGGAGGCAACATAATGTGCTT
GATCTCAACTATGTCAGGATGTCTTAGCAGCCTCAGAAGCTTGATCTCACGGAGAATCCGTGCA
GCATCAGATATGTGTTCAAAGATATCGTGTATCTTCTTGATTGCCACTTTCTCTCCAGTGTGGA
CATCTATCGCTGAGCACACCACCCCATAGCTTCCCTTACCAATAACTTCCTGAATCTTGTATCG
ACTTGCATCGCCATACTCCGTGAAAAAATCCGCCTCTGTAGAACT
Conservation Information
Conserved circRNAs osi_circ_010377
PMCS 0.203349418
Functional Information
Coding potential Y
Potential coding position 25156452-25154478(-)
Potential amino acid sequence MLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKP
KNILANSNCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIG
CIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSMDTISRVRNDKARRYLSSMRKKEPILFSQKF
PSADPLALDLLQKLLAFDPKDRPTAEESSTEADFFTEYGDASRYKIQEVIGKGSYGVVCSAIDV
HTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELM
ESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANSNCKLKICDFGLA
RVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVV
HQLDLMTDLLGTPSMDTISRVRNDKARRYLSSMRKKEPILFSQKFPSADPLALDLLQKLLAFDP
KDRPTAEESSTEADFFTEYGDASRYKIQEVIGKGSYGVVCSAIDVHTGEKVAIKKIHDIFEHIS
DAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHY
QFFLYQLLRALKYIHTANVYHRDLKPKNILANSNCKLKICDFGLARVAFNDTPTTIFWTDYVAT
RWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSMDTIS
RVRNDKARRYLSSMRKKEPILFSQKFPSADPLALDLLQKLLAFDPKDRPTAEESSTEADFFTEY
GDASRYKIQEVIGKGSYGVVCSAIDVHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPD
IVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANV
YHRDLKPKNILANSNCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPA
IDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSMDTISRVRNDKARRYLSSMRKKEP
ILFSQKFPSADPLALDLLQKLLAFDPKDRPTAEE(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017