Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Os08g0493900_circ_g.1 |
| ID in PlantcircBase | osa_circ_037480 |
| Alias | Os_ciR3191 |
| Organism | Oryza sativa |
| Position | chr8: 24385600-24387647 JBrowse» |
| Reference genome | IRGSP-1.0.38 |
| Type | e-circRNA |
| Identification method | CIRCexplorer, find_circ |
| Parent gene | Os08g0493900 |
| Parent gene annotation |
WD40 repeat-like domain containing protein. (Os08t0493900-01);WD 40 repeat-like domain containing protein. (Os08t0493900-02) |
| Parent gene strand | + |
| Alternative splicing | NA |
| Support reads | 4/1 |
| Tissues | root/root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Os08t0493900-01:5 Os08t0493900-02:5 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.232797363 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
24385628-24387644(+) 24387578-24385624(+) 24386066-24387616(-) |
| Potential amino acid sequence |
MHKKGVTCLAGRMVSDTVSIFASTSSDGTVVIWKMEDEPTSVGSCEVSCLHSISVGPKPMVSLS LAVLPGQGGHLILAMGGLDHKVHIYCGDQSGKFIKACQLKGHSDWIRSLDFSLPVMMGSEEHSL FLVSSSQDRTIRIWKMNSDAVSSAHTTPRKEDIGIASYIEGPLFVSSNTHYQVSLESLLVGHED WVYSVEWQPPTLLTDDEAHQPMSILSASMDKMMMIWKPEKNTGLWINSVTVGELSHSALGFYGG HWQPDGKSILAHGYGGSFHMWRDVGLGSENWQPQIVPSGHFAPVSDLTWSRSGEYLLSVSHDQT TRIFAPWRSQVSPGDVTCWREIARPQIHGHDINCVAFIQGTGNHRFVSGADEKVSRVFEAPLSF LKTLQHATLLKTDNSGDFDDVQVLGANMSALGLSQKPIYTHGPRETQSSISNDGPDSMETIPDA VPTVFTEPPVEDQLAWNTLWPETHKLYGHGNELFSICCDHEGKIIASSCKWTRALQLPVMHKKG VTCLAGRMVSDTVSIFASTSSDGTVVIWKMEDEPTSVGSCEVSCLHSISVGPKPMVSLSLAVLP GQGGHLILAMGGLDHKVHIYCGDQSGKFIKACQLKGHSDWIRSLDFSLPVMMGSEEHSLFLVSS SQDRTIRIWKMNSDAVSSAHTTPRKEDIGIASYIEGPLFVSSNTHYQVSLESLLVGHEDWVYSV EWQPPTLLTDDEAHQPMSILSASMDKMMMIWKPEKNTGLWINSVTVGELSHSALGFYGGHWQPD GKSILAHGYGGSFHMWRDVGLGSENWQPQIVPSGHFAPVSDLTWSRSGEYLLSVSHDQTTRIFA PWRSQVSPGDVTCWREIARPQIHGHDINCVAFIQGTGNHRFVSGADEKVSRVFEAPLSFLKTLQ HATLLKTDNSGDFDDVQVLGANMSALGLSQKPIYTHGPRETQSSISNDGPDSMETIPDAVPTVF TEPPVEDQLAWNTLWPETHKLYGHGNELFSICCDHEGKIIASSCKWTRALQLPVMHKKGVTCLA GRMVSDTVSIFASTSSDGTVVIWKMEDEPTSVGSCEVSCLHSISVGPKPMVSLSLAVLPGQGGH LILAMGGLDHKVHIYCGDQSGKFIKACQLKGHSDWIRSLDFSLPVMMGSEEHSLFLVSSSQDRT IRIWKMNSDAVSSAHTTPRKEDIGIASYIEGPLFVSSNTHYQVSLESLLVGHEDWVYSVEWQPP TLLTDDEAHQPMSILSASMDKMMMIWKPEKNTGLWINSVTVGELSHSALGFYGGHWQPDGKSIL AHGYGGSFHMWRDVGLGSENWQPQIVPSGHFAPVSDLTWSRSGEYLLSVSHDQTTRIFAPWRSQ VSPGDVTCWREIARPQIHGHDINCVAFIQGTGNHRFVSGADEKVSRVFEAPLSFLKTLQHATLL KTDNSGDFDDVQVLGANMSALGLSQKPIYTHGPRETQSSISNDGPDSMETIPDAVPTVFTEPPV EDQLAWNTLWPETHKLYGHGNELFSICCDHEGKIIASSCKWTRALQLPVMHKKGVTCLAGRMVS DTVSIFASTSSDGTVVIWKMEDEPTSVGSCEVSCLHSISVGPKPMVSLSLAVLPGQGGHLILAM GGLDHKVHIYCGDQSGKFIKACQLKGHSDWIRSLDFSLPVMMGSEEHSLFLVSSSQDRTIRIWK MNSDAVSSAHTTPRKEDIGIASYIEGPLFVSSNTHYQVSLESLLVGHEDWVYSVEWQPPTLLTD DEAHQPMSILSASMDKMMMIWKPEKNTGLWINSVTVGELSHSALGFYGGHWQPDGKSILAHGYG GSFHMWRDVGLGSENWQPQIVPSGHFAPVSDLTWSRSGEYLLSVSHDQTTRIFAPWRSQVSPGD VTCWREIARPQIHGHDINCVAFIQGTGNHRFVSGADEKVSRVFEAPLSFLKTLQHATLLKTDNS GDFDDVQVLGANMSALGLSQKPIYTHGPRETQSSISNDGPDSMETIPDAVPTVFTEPPVEDQLA WNTLWPETHKLYGHGNELFSICCDHEGKIIASSCK(+) MAMEMNSSPSAVIMKGRSLHHLASGLVRCNCL*(+) MRWPPCPGNTANESETIGFGPTDIECKQDTSQLPTLVGSSSIFQMTTVPSEEVEANIETVSDTI LPARQVTPFLCITGSCNARVHLQDDAMIFPS*(-) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ye et al., 2015;Chu et al., 2017 |