Detail information of Os08g0493900_circ_g.1


General Information
CircRNA Name Os08g0493900_circ_g.1
ID in PlantcircBase osa_circ_037480
Alias Os_ciR3191
Organism Oryza sativa
Position chr8: 24385600-24387647  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRCexplorer, find_circ
Parent gene Os08g0493900
Parent gene annotation WD40 repeat-like domain containing protein. (Os08t0493900-01);WD
40 repeat-like domain containing protein. (Os08t0493900-02)
Parent gene strand +
Alternative splicing NA
Support reads 4/1
Tissues root/root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Os08t0493900-01:5
Os08t0493900-02:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TACTCTATGGCCTGAAACTCACAAACTTTATGGCCATGGAAATGAACTCTTCTCCATCTGCTGT
GATCATGAAGGGAAGATCATTGCATCATCTTGCAAGtggactcgtgcgttgcaactgcctgtga
tgcacaaaaaaggggtcacctgtcttgctggaaggatggtgtcagatactgtttcaatatttgc
ctccacct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGACTCGTGCGTTGCAACTGCCTGTGATGCACAAAAAAGGGGTCACCTGTCTTGCTGGAAGGA
TGGTGTCAGATACTGTTTCAATATTTGCCTCCACCTCCTCAGATGGAACTGTGGTCATTTGGAA
AATGGAAGATGAACCAACTAGTGTTGGTAAGATAACAGACACATAGATTGTGATAAATTGTAGT
TAGAGCCTAATCTTGTTATTGTATCTGGAAGAAATCCATATTGATTCTAACTGGTATCTAAAGT
AAGCTCTATTGGTCAAATTATAATTCTAGTAACTGTTTGATTTTGATCTTAAAGTTTAAGGATA
TGTGCACTGCTGCCCAACTGAAGTAATTTGCTTCCATATGTGCAGGCAGCTGTGAAGTGTCTTG
TTTGCATTCTATATCCGTTGGTCCAAAGCCAATGGTTTCACTTTCATTAGCAGTATTGCCTGGG
CAGGGAGGCCATCTCATTTTGGCAATGGGAGGTTTGGATCACAAGGTCCACATTTATTGTGGGG
ATCAGTCAGGCAAGGTTTGTAACTGATGCTTTAGTCTCTTTTTGCTATCCGTTATTGCATTGCT
TGTCTTAAGTAAGGTTTTTTTGGTGTGCAGTTCATTAAAGCTTGTCAGCTTAAAGGTCATTCTG
ATTGGATTAGAAGTTTAGACTTCTCTTTACCTGTGATGATGGGCAGTGAGGAGCACAGCCTTTT
CCTTGTTAGCTCATCTCAGGATAGAACCATTCGGATCTGGAAAATGAATTCGGATGCTGTTTCT
TCTGCTCACACAACACCCAGAAAGGAAGATATTGGGATTGCCTCCTATATTGAAGGTCCTTTGT
TTGTGTCCAGTAATACACATTACCAGGTATCATTGGAGTCCCTTCTCGTTGGTCATGAGGACTG
GGTGTATTCTGTAGAATGGCAGCCTCCTACGCTACTAACTGATGATGAAGCTCATCAGCCAATG
AGCATATTATCTGCATCCATGGACAAGATGATGATGATATGGAAGCCAGAGAAAAATACCGGTC
TTTGGATAAATTCAGTGACTGTTGGTGAGTTAAGTCACTCAGCACTGGGATTCTATGGTGGCCA
TTGGCAGCCTGATGGCAAATCCATCCTTGCACATGGATATGGTGGATCGTTTCATATGTGGAGG
GATGTTGGACTGGGTTCTGAAAACTGGCAGCCTCAGATAGTCCCATCTGGTCATTTTGCACCTG
TATCTGACTTAACATGGTCAAGATCTGGTGAATATCTGTTATCAGTCAGCCATGATCAGGTGAG
TTCTTAGAACAGTTCTAATCCTAGCTAATAGAATGTAGTATGTTAATTGTCATTCTCCTCACCA
CTTACTAATCCTCTTTTGCATCAACAATAAATACGCAGACAACACGCATATTTGCTCCTTGGAG
AAGCCAAGTTAGCCCAGGGGATGTGACTTGTTGGCGTGAAATTGCTCGCCCTCAAATTCATGGG
CACGATATTAACTGTGTGGCATTCATTCAGGGTACCGGGAACCACCGGTTCGTTAGTGGCGCCG
ATGAAAAGGTCTCTAGAGTCTTTGAAGCTCCTTTGTCATTTTTGAAGACCCTTCAACATGCAAC
TTTGTTGAAAACTGATAACTCTGGAGATTTTGACGATGTGCAAGTACTTGGAGCAAATATGTCT
GCTCTTGGACTTTCACAGAAACCTATATATACACATGGTCAGCATTCATCATGCCCTCTTCATG
AATATACCATATCCTTTGTTTGGCACTTGTATTAGTACATAATTTAACTTTTCTGAGTTCTTCA
TTTGGTTGTTACTTATGTCTGTTGACGGTTGTATTCAGGACCAAGGGAAACCCAAAGCAGTATT
TCTAATGACGGGCCAGATTCCATGGAGACCATTCCTGATGCAGTGCCAACTGTGTTCACTGAGC
CTCCTGTAGAGGATCAACTAGCCTGGAATACTCTATGGCCTGAAACTCACAAACTTTATGGCCA
TGGAAATGAACTCTTCTCCATCTGCTGTGATCATGAAGGGAAGATCATTGCATCATCTTGCAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.232797363
Functional Information
Coding potential Y
Potential coding position 24385628-24387644(+)
24387578-24385624(+)
24386066-24387616(-)
Potential amino acid sequence MHKKGVTCLAGRMVSDTVSIFASTSSDGTVVIWKMEDEPTSVGSCEVSCLHSISVGPKPMVSLS
LAVLPGQGGHLILAMGGLDHKVHIYCGDQSGKFIKACQLKGHSDWIRSLDFSLPVMMGSEEHSL
FLVSSSQDRTIRIWKMNSDAVSSAHTTPRKEDIGIASYIEGPLFVSSNTHYQVSLESLLVGHED
WVYSVEWQPPTLLTDDEAHQPMSILSASMDKMMMIWKPEKNTGLWINSVTVGELSHSALGFYGG
HWQPDGKSILAHGYGGSFHMWRDVGLGSENWQPQIVPSGHFAPVSDLTWSRSGEYLLSVSHDQT
TRIFAPWRSQVSPGDVTCWREIARPQIHGHDINCVAFIQGTGNHRFVSGADEKVSRVFEAPLSF
LKTLQHATLLKTDNSGDFDDVQVLGANMSALGLSQKPIYTHGPRETQSSISNDGPDSMETIPDA
VPTVFTEPPVEDQLAWNTLWPETHKLYGHGNELFSICCDHEGKIIASSCKWTRALQLPVMHKKG
VTCLAGRMVSDTVSIFASTSSDGTVVIWKMEDEPTSVGSCEVSCLHSISVGPKPMVSLSLAVLP
GQGGHLILAMGGLDHKVHIYCGDQSGKFIKACQLKGHSDWIRSLDFSLPVMMGSEEHSLFLVSS
SQDRTIRIWKMNSDAVSSAHTTPRKEDIGIASYIEGPLFVSSNTHYQVSLESLLVGHEDWVYSV
EWQPPTLLTDDEAHQPMSILSASMDKMMMIWKPEKNTGLWINSVTVGELSHSALGFYGGHWQPD
GKSILAHGYGGSFHMWRDVGLGSENWQPQIVPSGHFAPVSDLTWSRSGEYLLSVSHDQTTRIFA
PWRSQVSPGDVTCWREIARPQIHGHDINCVAFIQGTGNHRFVSGADEKVSRVFEAPLSFLKTLQ
HATLLKTDNSGDFDDVQVLGANMSALGLSQKPIYTHGPRETQSSISNDGPDSMETIPDAVPTVF
TEPPVEDQLAWNTLWPETHKLYGHGNELFSICCDHEGKIIASSCKWTRALQLPVMHKKGVTCLA
GRMVSDTVSIFASTSSDGTVVIWKMEDEPTSVGSCEVSCLHSISVGPKPMVSLSLAVLPGQGGH
LILAMGGLDHKVHIYCGDQSGKFIKACQLKGHSDWIRSLDFSLPVMMGSEEHSLFLVSSSQDRT
IRIWKMNSDAVSSAHTTPRKEDIGIASYIEGPLFVSSNTHYQVSLESLLVGHEDWVYSVEWQPP
TLLTDDEAHQPMSILSASMDKMMMIWKPEKNTGLWINSVTVGELSHSALGFYGGHWQPDGKSIL
AHGYGGSFHMWRDVGLGSENWQPQIVPSGHFAPVSDLTWSRSGEYLLSVSHDQTTRIFAPWRSQ
VSPGDVTCWREIARPQIHGHDINCVAFIQGTGNHRFVSGADEKVSRVFEAPLSFLKTLQHATLL
KTDNSGDFDDVQVLGANMSALGLSQKPIYTHGPRETQSSISNDGPDSMETIPDAVPTVFTEPPV
EDQLAWNTLWPETHKLYGHGNELFSICCDHEGKIIASSCKWTRALQLPVMHKKGVTCLAGRMVS
DTVSIFASTSSDGTVVIWKMEDEPTSVGSCEVSCLHSISVGPKPMVSLSLAVLPGQGGHLILAM
GGLDHKVHIYCGDQSGKFIKACQLKGHSDWIRSLDFSLPVMMGSEEHSLFLVSSSQDRTIRIWK
MNSDAVSSAHTTPRKEDIGIASYIEGPLFVSSNTHYQVSLESLLVGHEDWVYSVEWQPPTLLTD
DEAHQPMSILSASMDKMMMIWKPEKNTGLWINSVTVGELSHSALGFYGGHWQPDGKSILAHGYG
GSFHMWRDVGLGSENWQPQIVPSGHFAPVSDLTWSRSGEYLLSVSHDQTTRIFAPWRSQVSPGD
VTCWREIARPQIHGHDINCVAFIQGTGNHRFVSGADEKVSRVFEAPLSFLKTLQHATLLKTDNS
GDFDDVQVLGANMSALGLSQKPIYTHGPRETQSSISNDGPDSMETIPDAVPTVFTEPPVEDQLA
WNTLWPETHKLYGHGNELFSICCDHEGKIIASSCK(+)
MAMEMNSSPSAVIMKGRSLHHLASGLVRCNCL*(+)
MRWPPCPGNTANESETIGFGPTDIECKQDTSQLPTLVGSSSIFQMTTVPSEEVEANIETVSDTI
LPARQVTPFLCITGSCNARVHLQDDAMIFPS*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015;Chu et al., 2017