Plant Circular RNA Database

Detail information of Os12g0118800_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os12g0118800_circ_g.1
					
						ID in PlantcircBase
						osa_circ_010370
					
						Alias
						NA
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr12: 917563-926731  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						CIRCexplorer
					
						Parent gene
						
							Os12g0118800						
					
						Parent gene annotation
						
							Ankyrin repeat containing protein. (Os12t0118800-01)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os12g0118800_circ_g.2 Os12g0118800_circ_g.3 Os12g0118800_circ_g.4 Os12g0118800_circ_g.5 Os12g0118800_circ_g.6 Os12g0118800_circ_g.7 						
					
						Support reads
						2
					
						Tissues
						shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os12t0118800-01:6

General Information
CircRNA Name	Os12g0118800_circ_g.1
ID in PlantcircBase	osa_circ_010370
Alias	NA
Organism	Oryza sativa
Position	chr12: 917563-926731 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	CIRCexplorer
Parent gene	Os12g0118800
Parent gene annotation	Ankyrin repeat containing protein. (Os12t0118800-01)
Parent gene strand	-
Alternative splicing	Os12g0118800_circ_g.2 Os12g0118800_circ_g.3 Os12g0118800_circ_g.4 Os12g0118800_circ_g.5 Os12g0118800_circ_g.6 Os12g0118800_circ_g.7
Support reads	2
Tissues	shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os12t0118800-01:6

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							CTGCCTGGACATGCTTTTCTTCACGAATGTAATTCCATACCTCGTCGACAATGTTATCTGTCTG
TTTGGCAATTAATCTAGTCGTGTCCAAGAACATTTTctgcataaaaaatacttaaagcttccag
gaattttttttgcccgtcgtctagcttttgttcccgtgcatgtatttttgtcagattcccttct
tccccgtg

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							Transcript length: 1245
Transcript exons: 917563-917885,921969-922296,922556-922620,922874-922923,
923009-923106,926351-926731
CTGCATAAAAAATACTTAAAGCTTCCAGGAATTTTTTTTGCCCGTCGTCTAGCTTTTGTTCCCG
TGCATGTATTTTTGTCAGATTCCCTTCTTCCCCGTGTACGTCCGGATCGCGAAGAGTCCGCAAT
GTTCCCACGGCAAGCGCAATATGTCCGCTACTGCTTCCAATCCATTCGTGGCCGGCTCAAATGC
TTCCAATTCGTTCGTGGCCAGCTTAAAACCTTCAGAGTTCGAGGAAAACAAACATGTCCACATG
GTTGCCAATCCAAAACCTTCAAAATTGGAGGAACATGACCAAAAATCGGCAACAAGAATAGATG
AAGCGCCAAAGATTTTCTGTAGTCAAGTGCGCTTAAACACCTTCCGGGACATTGAAGCAACAGT
ATAAAGCATCCTTCTGGACTCACTTGACAATGGGGGCCAGCCCATCGAACCAAGATTTCCCATT
GATTTGATTGGGTTACACGGGTGGTCCATACTCTTGGTCCCCTTCGTGCTCGCTTCAGCACTTA
GCAAGTCCTTCCTGCTTAGTTGACAGGATGGAACTATCTTTAGCTGCAACCGTCGAGACAACAC
CGATTTCCAGTATGGGAAGAACATATCTCTCACTTCGCGTATGGCTGATCCTTTAGGTGGTTGC
TTTCCCAGGATCATTTTACTAACTTCGCCTATATCAGAAGATGACTTGTCCGCTTCAATAGTTT
CCCCATAGCCCACTCTTTGTGAATCTGACTTGCCAATCGACATCCCCCCACCATGTTGGTAGCA
TTCAAGTTTTCCAGTGTCAATGCTTTCCCCAGAATGAGCAATGCCATTGCTTTTTAGAATTGAT
GAAACATGTTCAACAATTTCGTCATGGCGCACCTGTGAATGAGTTTGAATGTATCCCTCAAGAG
CTTCACCGGCTTTGTGAACAATGCCAACTAGTACAAGTGCTGTAAGAAGGGCTTCCTTCTTGTC
TTTCAATCTCTTTAGTGCCCTGCCATTCTTTCCCTCCTTAACCATATTTAACCCCTCAAGATGT
ATGGTGTTAAGAGCATCATCAATGTGGCTTTTAACAATATCAAACCCGTTCAGAGAGGCTTTGC
CACTGCTGTTGTTAAGGCGGCCACGGAGCTGCTTTTGAGCAGCCAGCAGCAAAATTGCTGCCTG
GACATGCTTTTCTTCACGAATGTAATTCCATACCTCGTCGACAATGTTATCTGTCTGTTTGGCA
ATTAATCTAGTCGTGTCCAAGAACATTTT
						
						Genomic sequence
						
							TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

Sequences
Splice junction sequence	CTGCCTGGACATGCTTTTCTTCACGAATGTAATTCCATACCTCGTCGACAATGTTATCTGTCTG TTTGGCAATTAATCTAGTCGTGTCCAAGAACATTTTctgcataaaaaatacttaaagcttccag gaattttttttgcccgtcgtctagcttttgttcccgtgcatgtatttttgtcagattcccttct tccccgtg
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1245 Transcript exons: 917563-917885,921969-922296,922556-922620,922874-922923, 923009-923106,926351-926731 CTGCATAAAAAATACTTAAAGCTTCCAGGAATTTTTTTTGCCCGTCGTCTAGCTTTTGTTCCCG TGCATGTATTTTTGTCAGATTCCCTTCTTCCCCGTGTACGTCCGGATCGCGAAGAGTCCGCAAT GTTCCCACGGCAAGCGCAATATGTCCGCTACTGCTTCCAATCCATTCGTGGCCGGCTCAAATGC TTCCAATTCGTTCGTGGCCAGCTTAAAACCTTCAGAGTTCGAGGAAAACAAACATGTCCACATG GTTGCCAATCCAAAACCTTCAAAATTGGAGGAACATGACCAAAAATCGGCAACAAGAATAGATG AAGCGCCAAAGATTTTCTGTAGTCAAGTGCGCTTAAACACCTTCCGGGACATTGAAGCAACAGT ATAAAGCATCCTTCTGGACTCACTTGACAATGGGGGCCAGCCCATCGAACCAAGATTTCCCATT GATTTGATTGGGTTACACGGGTGGTCCATACTCTTGGTCCCCTTCGTGCTCGCTTCAGCACTTA GCAAGTCCTTCCTGCTTAGTTGACAGGATGGAACTATCTTTAGCTGCAACCGTCGAGACAACAC CGATTTCCAGTATGGGAAGAACATATCTCTCACTTCGCGTATGGCTGATCCTTTAGGTGGTTGC TTTCCCAGGATCATTTTACTAACTTCGCCTATATCAGAAGATGACTTGTCCGCTTCAATAGTTT CCCCATAGCCCACTCTTTGTGAATCTGACTTGCCAATCGACATCCCCCCACCATGTTGGTAGCA TTCAAGTTTTCCAGTGTCAATGCTTTCCCCAGAATGAGCAATGCCATTGCTTTTTAGAATTGAT GAAACATGTTCAACAATTTCGTCATGGCGCACCTGTGAATGAGTTTGAATGTATCCCTCAAGAG CTTCACCGGCTTTGTGAACAATGCCAACTAGTACAAGTGCTGTAAGAAGGGCTTCCTTCTTGTC TTTCAATCTCTTTAGTGCCCTGCCATTCTTTCCCTCCTTAACCATATTTAACCCCTCAAGATGT ATGGTGTTAAGAGCATCATCAATGTGGCTTTTAACAATATCAAACCCGTTCAGAGAGGCTTTGC CACTGCTGTTGTTAAGGCGGCCACGGAGCTGCTTTTGAGCAGCCAGCAGCAAAATTGCTGCCTG GACATGCTTTTCTTCACGAATGTAATTCCATACCTCGTCGACAATGTTATCTGTCTGTTTGGCA ATTAATCTAGTCGTGTCCAAGAACATTTT
Genomic sequence	TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.197552042

Conservation Information
Conserved circRNAs	NA
PMCS	0.197552042

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							926683-917578(+)
917570-921990(-)
						
						Potential amino acid sequence
						
							MLSVCLAINLVVSKNIFCIKNT*(+)
MQKMFLDTTRLIAKQTDNIVDEVWNYIREEKHVQAAILLLAAQKQLRGRLNNSSGKASLNGFDI
VKSHIDDALNTIHLEGLNMVKEGKNGRALKRLKDKKEALLTALVLVGIVHKAGEALEGYIQTHS
QVRHDEIVEHVSSILKSNGIAHSGESIDTGKLECYQHGGGMSIGKSDSQRVGYGETIEADKSSS
DIGEVSKMILGKQPPKGSAIREVRDMFFPYWKSVLSRRLQLKIVPSCQLSRKDLLSAEASTKGT
KSMDHPCNPIKSMGNLGSMGWPPLSSESRRMLYTVASMSRKVFKRT*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	926683-917578(+) 917570-921990(-)
Potential amino acid sequence	MLSVCLAINLVVSKNIFCIKNT(+) MQKMFLDTTRLIAKQTDNIVDEVWNYIREEKHVQAAILLLAAQKQLRGRLNNSSGKASLNGFDI VKSHIDDALNTIHLEGLNMVKEGKNGRALKRLKDKKEALLTALVLVGIVHKAGEALEGYIQTHS QVRHDEIVEHVSSILKSNGIAHSGESIDTGKLECYQHGGGMSIGKSDSQRVGYGETIEADKSSS DIGEVSKMILGKQPPKGSAIREVRDMFFPYWKSVLSRRLQLKIVPSCQLSRKDLLSAEASTKGT KSMDHPCNPIKSMGNLGSMGWPPLSSESRRMLYTVASMSRKVFKRT(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Chu et al., 2017

circRNA

Detail information of Os12g0118800_circ_g.1

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