Detail information of AT2G02710_circ_g.6


General Information
CircRNA Name AT2G02710_circ_g.6
ID in PlantcircBase ath_circ_012601
Alias NA
Organism Arabidpsis thaliana
Position chr2: 759378-759898  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT2G02710
Parent gene annotation Protein TWIN LOV 1
Parent gene strand -
Alternative splicing 2_circ_ag.11 AT2G02710_circ_g.1 AT2G02710_circ_g.2 AT2G02710_circ_g.3 AT2G02710_circ_g.4 AT2G02710_circ_g.5
Support reads 28
Tissues root, whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT2G02710.1:3
AT2G02710.2:3
AT2G02710.4:3
AT2G02710.3:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCGCTGTAATGCACTAAGATAGATAACACATTGTTAATAGCTTCCGTAGCTTTCAGCTTCTCGG
ACTCACTCGCTTCACACTGTTCCCAATCCTCTAATCctcgtatagtactgaggaatcagtatca
accccactcagaaatctacagttttgtcccaacacttcctgtctcttgtaacctacaaacattg
atataaat
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 353
Transcript exons: 759378-759457,759539-759603,759691-759898
CTCGTATAGTACTGAGGAATCAGTATCAACCCCACTCAGAAATCTACAGTTTTGTCCCAACACT
TCCTGTCTCTTGTAACCGGTCAGTGTCAAAAAGGCATCACTCGCATAAATGATAGGCATGTCTG
GTAAGCATGGATTGGTTAATACGAAACTTTGTTTGATTCTACCGAGAGAAATAACTAACGACGA
GCTTAGACAATCTACTCCTCGCAAGCAGTACCGCTTTCCGCAGACTAATCTACCACTCAACTCG
CTGTAATGCACTAAGATAGATAACACATTGTTAATAGCTTCCGTAGCTTTCAGCTTCTCGGACT
CACTCGCTTCACACTGTTCCCAATCCTCTAATC

Genomic sequence CTCGTATAGTACTGAGGAATCAGTATCAACCCCACTCAGAAATCTACAGTTTTGTCCCAACACT
TCCTGTCTCTTGTAACCTACAAACATTGATATAAATAAGAACTGTGACCAAAATCTAATAACGG
TAACTTTATTTCTTCAAACCTAGACACACTTACCGGTCAGTGTCAAAAAGGCATCACTCGCATA
AATGATAGGCATGTCTGGTAAGCATGGATTGGTTCTGCAAAGTTACGAGAACAATGTCAATATC
AAAATCTATTGTAGCAGACTGTAACTCCATAACACAATAAAAAAATAATGTACTCACAATACGA
AACTTTGTTTGATTCTACCGAGAGAAATAACTAACGACGAGCTTAGACAATCTACTCCTCGCAA
GCAGTACCGCTTTCCGCAGACTAATCTACCACTCAACTCGCTGTAATGCACTAAGATAGATAAC
ACATTGTTAATAGCTTCCGTAGCTTTCAGCTTCTCGGACTCACTCGCTTCACACTGTTCCCAAT
CCTCTAATC
Conservation Information
Conserved circRNAs NA
PMCS 0.246760326
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017