Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d043667_circ_g.3 |
ID in PlantcircBase | zma_circ_007811 |
Alias | zma_circ_0001314 |
Organism | Zea mays |
Position | chr3: 206746457-206749876 JBrowse» |
Reference genome | AGPv4.38 |
Type | u-circRNA |
Identification method | find_circ |
Parent gene | Zm00001d043667 |
Parent gene annotation |
Myosin family protein with Dil domain |
Parent gene strand | + |
Alternative splicing | Zm00001d043667_circ_g.4 |
Support reads | NA |
Tissues | leaf, root |
Exon boundary | Yes-Yes |
Splicing signals | GT-AG |
Number of exons covered | Zm00001d043667_T025:5 Zm00001d043667_T021:8 Zm00001d043667_T016:7 Zm00001d043667_T023:8 Zm00001d043667_T011:6 Zm00001d043667_T001:8 Zm00001d043667_T020:8 Zm00001d043667_T013:8 Zm00001d043667_T024:4 Zm00001d043667_T008:8 Zm00001d043667_T005:4 Zm00001d043667_T003:8 Zm00001d043667_T019:8 Zm00001d043667_T015:4 Zm00001d043667_T002:8 Zm00001d043667_T004:4 Zm00001d043667_T010:8 Zm00001d043667_T022:8 Zm00001d043667_T014:8 Zm00001d043667_T026:2 Zm00001d043667_T007:7 Zm00001d043667_T009:8 Zm00001d043667_T012:7 Zm00001d043667_T017:8 Zm00001d043667_T018:4 Zm00001d043667_T006:4 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.030963743 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
206747520-206749873(+) |
Potential amino acid sequence |
MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL LKEIYSANRKNDQLQSTIERLEGTVSEHEGLLLTERQQNEAANAALAESQARNEALVSKLEDAV KQNDLLHEADQRFQEATKNLESSLTFEKQRHEANLIELAEAREKIEELQREVGDTDEKFTLLQT SIQSVEERLREKDALLTTERLESEATKKSLNESEDRNQDLLLKIEIAQKDIAHFQETVRRHEEN MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL LKEIYSANRKNDQLQSTIERLEGTVSEHEGLLLTERQQNEAANAALAESQARNEALVSKLEDAV KQNDLLHEADQRFQEATKNLESSLTFEKQRHEANLIELAEAREKIEELQREVGDTDEKFTLLQT SIQSVEERLREKDALLTTERLESEATKKSLNESEDRNQDLLLKIEIAQKDIAHFQETVRRHEEN MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL LKEIYSANRKNDQLQSTIERLEGTVSEHEGLLLTERQQNEAANAALAESQARNEALVSKLEDAV KQNDLLHEADQRFQEATKNLESSLTFEKQRHEANLIELAEAREKIEELQREVGDTDEKFTLLQT SIQSVEERLREKDALLTTERLESEATKKSLNESEDRNQDLLLKIEIAQKDIAHFQETVRRHEEN MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL LKEIYSANRKNDQLQSTIE(+) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Ma et al., 2021b |