Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Zm00001d043667_circ_g.3 |
| ID in PlantcircBase | zma_circ_007811 |
| Alias | zma_circ_0001314 |
| Organism | Zea mays |
| Position | chr3: 206746457-206749876 JBrowse» |
| Reference genome | AGPv4.38 |
| Type | u-circRNA |
| Identification method | find_circ |
| Parent gene | Zm00001d043667 |
| Parent gene annotation |
Myosin family protein with Dil domain |
| Parent gene strand | + |
| Alternative splicing | Zm00001d043667_circ_g.4 |
| Support reads | NA |
| Tissues | leaf, root |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Zm00001d043667_T025:5 Zm00001d043667_T021:8 Zm00001d043667_T016:7 Zm00001d043667_T023:8 Zm00001d043667_T011:6 Zm00001d043667_T001:8 Zm00001d043667_T020:8 Zm00001d043667_T013:8 Zm00001d043667_T024:4 Zm00001d043667_T008:8 Zm00001d043667_T005:4 Zm00001d043667_T003:8 Zm00001d043667_T019:8 Zm00001d043667_T015:4 Zm00001d043667_T002:8 Zm00001d043667_T004:4 Zm00001d043667_T010:8 Zm00001d043667_T022:8 Zm00001d043667_T014:8 Zm00001d043667_T026:2 Zm00001d043667_T007:7 Zm00001d043667_T009:8 Zm00001d043667_T012:7 Zm00001d043667_T017:8 Zm00001d043667_T018:4 Zm00001d043667_T006:4 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.030963743 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
206747520-206749873(+) |
| Potential amino acid sequence |
MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL LKEIYSANRKNDQLQSTIERLEGTVSEHEGLLLTERQQNEAANAALAESQARNEALVSKLEDAV KQNDLLHEADQRFQEATKNLESSLTFEKQRHEANLIELAEAREKIEELQREVGDTDEKFTLLQT SIQSVEERLREKDALLTTERLESEATKKSLNESEDRNQDLLLKIEIAQKDIAHFQETVRRHEEN MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL LKEIYSANRKNDQLQSTIERLEGTVSEHEGLLLTERQQNEAANAALAESQARNEALVSKLEDAV KQNDLLHEADQRFQEATKNLESSLTFEKQRHEANLIELAEAREKIEELQREVGDTDEKFTLLQT SIQSVEERLREKDALLTTERLESEATKKSLNESEDRNQDLLLKIEIAQKDIAHFQETVRRHEEN MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL LKEIYSANRKNDQLQSTIERLEGTVSEHEGLLLTERQQNEAANAALAESQARNEALVSKLEDAV KQNDLLHEADQRFQEATKNLESSLTFEKQRHEANLIELAEAREKIEELQREVGDTDEKFTLLQT SIQSVEERLREKDALLTTERLESEATKKSLNESEDRNQDLLLKIEIAQKDIAHFQETVRRHEEN MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL LKEIYSANRKNDQLQSTIE(+) |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Ma et al., 2021b |