Detail information of Zm00001d043667_circ_g.3


General Information
CircRNA Name Zm00001d043667_circ_g.3
ID in PlantcircBase zma_circ_007811
Alias zma_circ_0001314
Organism Zea mays
Position chr3: 206746457-206749876  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d043667
Parent gene annotation Myosin family protein with Dil domain
Parent gene strand +
Alternative splicing Zm00001d043667_circ_g.4
Support reads NA
Tissues leaf, root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Zm00001d043667_T025:5
Zm00001d043667_T021:8
Zm00001d043667_T016:7
Zm00001d043667_T023:8
Zm00001d043667_T011:6
Zm00001d043667_T001:8
Zm00001d043667_T020:8
Zm00001d043667_T013:8
Zm00001d043667_T024:4
Zm00001d043667_T008:8
Zm00001d043667_T005:4
Zm00001d043667_T003:8
Zm00001d043667_T019:8
Zm00001d043667_T015:4
Zm00001d043667_T002:8
Zm00001d043667_T004:4
Zm00001d043667_T010:8
Zm00001d043667_T022:8
Zm00001d043667_T014:8
Zm00001d043667_T026:2
Zm00001d043667_T007:7
Zm00001d043667_T009:8
Zm00001d043667_T012:7
Zm00001d043667_T017:8
Zm00001d043667_T018:4
Zm00001d043667_T006:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAAAGCATTAGCAGAGGCACAAGGGAGGATTGAAGGTTTACTGAAGGAAATTTATTCTGCTAA
TAGAAAAAATGATCAACTTCAAAGTACTATAGAAAGactagaagggactgtaagcgaacatgag
ggccttttgctaactgaaaggcaacaaaatgaagcagctaatgctgcacttgctgaatctcaag
cgagaaat
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence ACTAGAAGGGACTGTAAGCGAACATGAGGGCCTTTTGCTAACTGAAAGGCAACAAAATGAAGCA
GCTAATGCTGCACTTGCTGAATCTCAAGCGAGAAATGAAGCACTGGTAAGCAAGCTTGAAGATG
CTGTGAAACAAAATGATCTCCTCCATGAAGCTGACCAAAGGTTAGTGTTTATTCCAGAAAGTAA
TGTGGCCAACTCTGCAAACTGTAGCATCATCAATAATCCCTAATTTGCATATCTATAAGGTCAT
AGCTATTCTTTAAGAACAAAAAATAGCCCAATAACACAGTGGCATTAATTATTGTTAGCTGTAC
AGATTAATCTTTTTTCTTTTCATCCTTCTATATGTGTTCCATATAGTTTGCATCTTGTTGAATG
CAGATTTCAAGAAGCTACAAAAAATTTGGAATCTTCACTGACATTTGAGAAGCAACGACATGAG
GCAAATTTGATAGAATTAGCTGAAGCACGAGAAAAGATTGAAGAACTTCAAAGAGAAGTTGGGG
ACACTGATGAAAAATTCACCCTGCTTCAGACTAGTATACAAAGGTTTTTCTTTTATTCCCTTTT
GCAAGAGTTCTAACCTCCTGTGATAATGCATTGAGTTTTTTAGATAACTTTTAATTATAAATAT
ACAATGTCTAGATTAATTTGCATGAAAAAGGGGAAAGGATTAACCCCTCACAAGACTAATAATT
ATTTCTTTCTTTGATGGGTGGACATAGCGTTGAAGAAAGGTTAAGAGAGAAGGATGCTCTATTG
ACAACAGAAAGACTAGAAAGTGAAGCAACTAAGAAATCACTAAATGAATCTGAGGATAGAAACC
AGGACTTACTACTGAAAATTGAAATTGCTCAGAAAGACATTGCTCACTTCCAAGAAACCGTCCG
AAGGTATGTTGCTTAATGGTTAACTTGCCCTATTTTGTGCTTGAGGGCGGTTCATTTCTGATTT
GTTTCCTGATTATGCAGTCATGATCTTGTTAATAAATCAATCTACATGTCGCTATTCTCTTAGC
TTATATTTTGTTCCCATTGGTTTAGACATGAAGAAAATATGGCAGCACTGGAAACTTCGTTGAG
ATCTGAAAGGCAGCAAAATGATGCAATCATGAAACAACTAGCTGAATCTCAGGGGGAAATAGGA
GAGCTGCAAAGGAAGCTTGAAGATGCTGATGCCAGAAATGGGCTTCTTCAAGATTCTTTACAGA
GGTTCCATTATTACCTTGTATCGATATCAAGTGTTATCGCTATTCTCTTAGCTTATATTTTGTT
CCCATTGGTTTAGACATGAAGAAAATATGGCAGCACTGGAAACTTCGTTGAGATCTGAAAGGCA
GCAAAATGATGCAATCATGAAACAACTAGCTGAATCTCAGGGGGAAATAGGAGAGCTGCAAAGG
AAGCTTGAAGATGCTGATGCCAGAAATGGGCTTCTTCAAGATTCTTTACAGAGGTTCCATTATT
ACCTTGTATCGATATCCAGTGTTTGTCGCTATTCTCTTAGCTTATATTTTGTTCCCATTGGTTT
AGACATGAAGAAAATATGGCAGCACTGGAAACTTCGTTGAGATCTGAAAGGCAGCAAAATGATG
CAATCATGAAACAACTAGCTGAATCTCAGGGGGAAATAGGAGAGCTGCAAAGGAAGCTTGAAGA
TGCTGATGCCAGAAATGGGCTTCTTCAAGATTCTTTACAGAGGTTCCATTATTACCTTGTACCG
ATATCCAGTGTGATGTTCCAGTTGCCCTGTTATCCTTCTGTCAAAATCACACATCATGTTAGTG
AACTCATATGGGTAAACTATTGCCCTGTAAGTCTGTAGTCTATTTCTTTTTCAAGAAAAACAGT
TTGCTAAATAAATTTAAGAAAAATCAAGAAATAAGTAAAGAAGTTACAAAAACATTACTCTCCC
ATTTCATTTTATAGGTCGTTTTGGCTTTTCTAGATATACAACTTTTATTATGTATCAACTATTT
AGACATATAGTATATCTAGGTGCATAGCAAAAGCTATGTACCTAGAAAAGTCAAAATGACCTAT
AATTTGGAACAGCAAATGGTATGAGTTAGATAGAAAGATGAATAACTTAAAAAGGGAAGATGTT
GAACATGGTTAAATTTGCTCAGTTGCATGCTCGATTAGATTATCACAAAGGACATGATTACCTT
AGGGGGTGTTTGGTCTCCCTAACTAAAATTTACTCTGTGTCACTTCAGATATTTGAATGCCAAT
TACGAGTATTAAATACAGTCTAATTGCAAAACTAATTACACAGACGAGGACTGAACGGCAAGAC
GAAACTAGTAAGCCTAATTAGTCTGAGAATGAACTAAACTTTAGTCTGAGAGACCAAAACTTCC
ACTGTTTTTTAAGTAGAAGTTTTGTGTTTACATCGTCTCACATATGTGTTAGCATCAACATTCC
TTTAAAATTAGCCCAAAGCTATCTCTGAACCAGAGGGTACAGCTTATCCTGTTGTTTTTTCCAT
CCTTTCTTCTTGTCCCTATCCCTATGGAGTAAAGGTTGAAACACCAGCAAAGTTCGAGCAGAAG
TGAAGAATTCGAAAAAAGCACTTACCAGGTCTGAAAGAGAAAATTTTAAGTTGATTATGGAAGC
CGAAGGCACTGCCAAAAAATTTCAGCTATTTGATTCCATAATAGATGGTCATCTAGTGGCATCT
TTTTTGTTGTTGAAGAATTGCAGCATCATGAAAATTTGATATACATGTTACCAACTGCAAAATG
ACAAAAATATGTGGTAAGGAGAATCGTAGATCCTGGTAAGAAAACAAAGTTGTGAGTGATAATT
GGTTTACCAGCTACTGTAAGCTTGTCAAGTATACACTACTCATTCTTGATGATCTAGTACTGCT
TTTAGCTTTCAGAGGAGAATCAAGTTTTCTTTTTTTTTTCTTAGAGATCCCAATGTTGTTTTTA
GTAATCTATTTTCTGTGAGGCTTTTTGAGTAGTCACATTGTATTTTTTCTCAATACACCTCAGA
CTTGAAGACGATGCTACTACAAGAGAAGCTTTAATGGAAACTGAAAGGAAAGAAACTGAAATGA
CAAAAAAGACACTGACTGAAGCTCTGGATCAAATCGAGGAATTAGTCAAAGAAGTTGAGTGTGC
TAACCACAGTGTGCATCAGCTTCAAGATAGTATGCAGAGGTACTGCAACATAGCAGTCGTTTAT
GGTACCTAATTTTATTTCTTAGTTTTTTTACCATTTTTATCCATGAACGCAGAATGGAGCAAAC
CGCAGTTGCAAGGGAAGCAACTTTACTAGCAGAACATCAGGAAAAAGATGCGACATCAAAAGCA
TTAGCAGAGGCACAAGGGAGGATTGAAGGTTTACTGAAGGAAATTTATTCTGCTAATAGAAAAA
ATGATCAACTTCAAAGTACTATAGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.030963743
Functional Information
Coding potential Y
Potential coding position 206747520-206749873(+)
Potential amino acid sequence MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL
RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND
AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE
ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL
LKEIYSANRKNDQLQSTIERLEGTVSEHEGLLLTERQQNEAANAALAESQARNEALVSKLEDAV
KQNDLLHEADQRFQEATKNLESSLTFEKQRHEANLIELAEAREKIEELQREVGDTDEKFTLLQT
SIQSVEERLREKDALLTTERLESEATKKSLNESEDRNQDLLLKIEIAQKDIAHFQETVRRHEEN
MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL
RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND
AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE
ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL
LKEIYSANRKNDQLQSTIERLEGTVSEHEGLLLTERQQNEAANAALAESQARNEALVSKLEDAV
KQNDLLHEADQRFQEATKNLESSLTFEKQRHEANLIELAEAREKIEELQREVGDTDEKFTLLQT
SIQSVEERLREKDALLTTERLESEATKKSLNESEDRNQDLLLKIEIAQKDIAHFQETVRRHEEN
MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL
RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND
AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE
ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL
LKEIYSANRKNDQLQSTIERLEGTVSEHEGLLLTERQQNEAANAALAESQARNEALVSKLEDAV
KQNDLLHEADQRFQEATKNLESSLTFEKQRHEANLIELAEAREKIEELQREVGDTDEKFTLLQT
SIQSVEERLREKDALLTTERLESEATKKSLNESEDRNQDLLLKIEIAQKDIAHFQETVRRHEEN
MAALETSLRSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSL
RSERQQNDAIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRHEENMAALETSLRSERQQND
AIMKQLAESQGEIGELQRKLEDADARNGLLQDSLQRLEDDATTREALMETERKETEMTKKTLTE
ALDQIEELVKEVECANHSVHQLQDSMQRMEQTAVAREATLLAEHQEKDATSKALAEAQGRIEGL
LKEIYSANRKNDQLQSTIE(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b