Detail information of Os05g0503300_circ_g.8


General Information
CircRNA Name Os05g0503300_circ_g.8
ID in PlantcircBase osa_circ_042151
Alias NA
Organism Oryza sativa
Position chr5: 24780792-24780936  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os05g0503300
Parent gene annotation Similar to Sulfite reductase (Fragment). (Os05t0503300-02);Simil
ar to ferredoxin-sulfite reductase precursor. (Os05t0503300-03)
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os05t0503300-02:1
Os05t0503300-03:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AGAACGCCATGCAGCTGAAATGTTTGTCTGGTCGTCAATCGGAGTGTTCCAATACCAAATTCAT
CAGCTAGCatctccacaggcacctaatgatgaacccatattctttataacagtgctgatgacag
tcttcaggttcttctta
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 145
Transcript exons: 24780792-24780936
ATCTCCACAGGCACCTAATGATGAACCCATATTCTTTATAACAGTGCTGATGACAGTCTTCAGG
TTCTTCTTAAGAACGCCATGCAGCTGAAATGTTTGTCTGGTCGTCAATCGGAGTGTTCCAATAC
CAAATTCATCAGCTAGC

Genomic sequence ATCTCCACAGGCACCTAATGATGAACCCATATTCTTTATAACAGTGCTGATGACAGTCTTCAGG
TTCTTCTTAAGAACGCCATGCAGCTGAAATGTTTGTCTGGTCGTCAATCGGAGTGTTCCAATAC
CAAATTCATCAGCTAGC
Conservation Information
Conserved circRNAs NA
PMCS 0.227604483
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study