Detail information of BGIOSGA029385_circ_ag.2


General Information
CircRNA Name BGIOSGA029385_circ_ag.2
ID in PlantcircBase osi_circ_018682
Alias Chr09:22382556_22388077(MH63RS2), Chr09:22382556_22388077(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr9: 19635532-19640381  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method CIRCexplorer2, CIRCexplorer2
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA029385_circ_ag.1 BGIOSGA029385_circ_ag.3 BGIOSGA029385_circ_ag.4 BGIOSGA029385_circ_ag.5 BGIOSGA029385_circ_ag.6 BGIOSGA029385_circ_ag.7 BGIOSGA029385_circ_ag.8 BGIOSGA029384_circ_g.1
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TT
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAAGGACATGCCACGACTTGTCAAGGGGATGCGTCAACTTGTAGAAGGTTAAGAGGCCAGGTGG
AAGTGTCCCAAGCTTCCAAAGAACCCGGTCTTCATTagaaaagtgcataatggtagagctctgg
attttccaagttctcgctcctcgggaacttccttttctccaacgggaggagatagtaatctatt
gttaagcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AGAAAAGTGCATAATGGTAGAGCTCTGGATTTTCCAAGTTCTCGCTCCTCGGGAACTTCCTTTT
CTCCAACGGGAGGAGATAGTAATCTATTGTTAAGCGCATCGACAAACAATGAATGCTGTTTGGA
ATTGTCTTCGCAGCCAACTGGCTAAGAAATGTACTCTGCTTCTTCAAGCTCCTGACTTGTTCAT
CTGCTGACTGAAGCATAGCTCTAAGTCTCTGAGTAACCGCCTTGCAATCATACACATCTTCTCT
AGCCTTGGATAGAAGTTGACCCATTACTCTGACTTTCTCAGGTGCACTGCAAAGTACATTATTT
GTCATGATAGAGAACAAGATGAGATATAAAAATATGACGTGAAAATAGGCACAAACCTATGATG
AAGGTCAGAATCAGCAGTAGCCTCTCCAACAGCCCGCTGGCTTTCCTTGATCCTGGTTTGCAGC
TCTTGATAAAGATCATTCTTGTTCTTTGATTTAGCAAGCACAGAATAAACACGTGCCATAATAA
TCTGGTCTCTCATCAATCTAACTGTCAAATCTGAGTTCTCATTCTCATTCTCCTTTCTCCAAAT
GCTGTATTTCCCAAGGACAGCAGAATCTTTGATCGATCAATAGCAGCATTCTCCAGCTTAACAC
GTGCTTCATCATCTTTCCTTACAAATCCATTGCCCTCTTTTCACGCCTTTTCTCCCTTAGTTTC
TTTAGTGACCAAACAGTATCAAGGGATGAATGATGTCATAATGCATACGATAGAAACAAATAAC
AATGCATCAATGTACATACAAGAAGATCAGCATTCTTACCCTTCGAACATTTTTTGCAGCCGTG
TCGACTTGATGTTCATCTGCACAGACAAGAAGTTTATTTTCTTGCATACCTAATCAGACGATGT
AAAAATTTAAAATGTGCTTTTTTTAAAAAAAAGCATGGTTATTTTTGTACCAGTATCATCCTTG
AGTGTTTTATCTGTAGAGCTGTTTGCAGATTTAACCTTGTCATCAATATCCAAACTCGCATTGC
TCAGGTCATTGACTAGATCATCAGTTTTCCAAGAGGGAGATGCACGTTTTATGAAAAAATCAAC
ACTCAAAGCCCCTGCTTCTTGTTGACTAGAAGCTAAAGCATCAAACATCTGGAGACCAGAAGGC
ATGTATAAGACTAAAAGAACAGAAAAATTGAGGATACTTCTGAACAAGAAGACAGTTTCTTATG
CAAATAACAGTAGATGGTAATTGAAAAATCAAAATGTCCACAACAGAATTACAGAGCAGATAGG
GGACACAGCATGCAAATCTACTTGGAACAACAGAGAGTAGCATGGTATTTAGAGAAAAGGCAAT
CAGTTGCAAGGACAAATCAGAGAGGATGACGTTGCGAAATTAGTAGCATAGCAAAGATGAGCAC
GTTGTTATGTACCCTTGTACATTTCCATGAAACCAAAAAAGAAAGATAAGAAATTATATTACTA
AGTCGCGAGACAATTCTGACCTCCTTGGACAAAATAGATTTCAGGTTGTTCGTTGGCAGCTGTT
TTTGCCATTCTGTTTCCTGCAAGAAAGCTTTAATGTGAGATGGATCCTCAAAATTTAGGCTAAG
CAATTAACTAGCTCCCAGAATGGAAAAATACCTGAGTACCTTCCATATCCATGGGATCTGCAGG
TAAACAAACTACAACATCACTTATCTATTTCAAATCAGTATAACAGTATTCAAATACTACAAAA
CATTGACAATGTTCCTACAGTTCTAATAAATGTAGTTTTCTTGTTTATAGGCTTTTGGCACTAC
AATTACATCCACAATTCACTTGTGCACCCTAGATTCTTAATAGCTAGGGCTTTCCCCACAATGT
CACACATCTAACCTAGCAAAGGCACAAGTGACACTACAATAGATAGGAAAATGGTTTCCAAAAT
CACTTGAATCACAACTTCAACTGTCTGCTGTAAACTCATGATTCCTTCAAAGTGCGATGGATTA
ATTTTTGTTTCCAAAACAGAGCATCATGATCCAATTATCTACGTTTTCTATCCAAAATCATAAC
CAAGCCTACTAATACAACTCATCAATTGAATTTAACAATAGTACCTAAACCACTGACATCTACT
CGGATTCCATTCCGAGTAATATCCCTCAGACCAACGCTGGGAAACTAACCAAACCTGAACACAT
CACTCCCCAGTCCCCACCCCCACCTTAAAAAAAACAATCTAGATGCTACATTCGCGACGGAGGA
TGCGATTAACAACCGACAGCGCCGCGCATCAGGAGGGGGGAGGGGGATGCAAACCGGAACCTGA
GCCGACGTGGCCCCCATTGCACGCGACGAAGAAGATCGACGGCGCGAGAACGAAGAGGAACACG
ACGACCACCAGCGGCGCCACCACGCCGCGCCTCCCTCCTCCGCCGCCGCCGGCCGTGGAGTACG
GGAGCCGCTTCGAGTTCGCCATCTCCAGCGAAGGGTAGGATCCGCGGGGGTCCACCTCGCCGGA
GAGTGCACGTACGTCGCGCGCGGCGCGCTTCCCTCTCCGCCGCCTCCGCCGAGAGTGGGGTGGG
GGGAGTGGCGTGGTGAGGGGAAGCCTGGAAAGGAAGGGGAAAGCACCCGAAGATGTGAGGCAAC
CGATGGTGGGCTATTTGGGCCTTTTTGAAAACCATCTAGGCTTCTGCCTTGTCTACGGCCCCGT
TTAGATGGGCCAAATTGAGGCCCACCTATGTGTATGGGCTAGTATGAAACAAAGGTTAAAAAAA
AAGAGGTGGTCTAAAAGTGAAAATATTGGTTAAGGGTTCGTGGTGAAACTAGGGTAAAAATAAT
TAGTCCAATGTTAAATGCACTCTACTTTAATTAACTTATTTGGCCCTATTTAGCACAACTCCGG
ATTTAAGATTTCTTTTTTTTAGTTATGTATTTTTAGCTCCACAAATGCATGAATCGAAATCTAA
GGTTACATCAAAAATATCTAGATTAGTCATTTTGTTCTTAGTTTAGACTAAATATAATATTTGA
AACCAATACAATTTAACATACATACTTCAAATCCAACGTAAAATTGGGAGCTAGAGTTCTGACA
AATAAATCCTTTATTTTGTCAACCAGTTCATAAAATCTTTGGTAACCTTAGAGTTTAGGAATTT
AATAGTATAGGACCTCCATTTTGAAATATATGACGCCTTGACCTTTTAATTTTTGGATATAATG
TTTCACAATTTGTCTTATTTAGAATACTATGCAAGTACTTGTTTTGTTTCATATTATAAGACAT
TTTGGGTTTCGAATAGATTTATGCATGGATCCATATATGTGCATCATATACGTGTCTAAATTTA
TATAGATGTTAGTTAATCTAGATGTGGGGTCGAGAGGCCAAAACGTCTTATAGCATGAAACAAA
GGAAGTAACATTTATTTTGTATTTGATATGTTTTATCATTAAAGGTACTTTAACAATTATTGCA
ATAAATCTTTAAATAAAATGAATTGCTCAACATCATGTCTAAAAATTAATAGCATTATTACATA
TTTAAAAATATAGGGAGTAATGGATCGGACGAGATGAGTACATGTAGTGAGTGGTTCTCCGATT
AGTTTTAGGGCTGGTTTTCATTACTTTTATTGCCTGGATCTCTTTTCATGATTTTCAGGCAATC
AAAAAAATCTACCCCAAATTACAAAAATCAAACTTTGAATTCAAAAAACGCTTTAAATCTAAAG
GAGTACCAAGCAGATCCATCTCGGCCACTCAATATGTTGGTCCATATCAAGCCAGTTAAGCTTC
AACTAGAGAGATAGCATAGGTTACTTTCAGAAAAAACAAAAGGGGAAAAAACAGAGAGCATAAG
AGTCGTTTTATAGCAGTAGAAAGAAGCAAGAGTTACACGCATCAAGGTGGTGTTTGGATAGGGA
CTTAACTTTAGTCCTGTATTTAGACACTAAACTTTAGTCCTGTATTTAGACACTAAACTTTAGT
CCTGTATTTAGACACTAATTTAGAGTATAAAATATAGACTACTTACAAAACTAATTCAATAAAT
GAAAGCTAATTCGCGAGACAAATTTTTTAAACCTAATTAATTGATAATTAGAGAATGTTTACTG
TAGCATTACATAAACTAATCATGGATTAATTAGGCTCAATATATTCGTCTCGTGAATTAGTCCA
AAATTATTGATGAGTTTTTATTAATAGTTTACGTTTAATATTTATAATTAGTATCCAAACATCC
AATGTGATAGGGACTTAAAAACAGGGCCCAAGCACACCATAGAAAAAAGACGCCCCACATCACG
GTTGCAGACAAAGTTGCAGATTCCAGCAATGACGCAATTAAAACCGAAAATTATCTCTCAACCA
TCCATTCGATCCATCAACTCATGCGGTGATCGATCGATCAGCTGGAGAGAAAGTTCCAGTGACA
GGTTCATCAAAATTAAGCCGGCAGGCAAGCCTGAAAGCTACCGTTAACGCATTTTATTTTTTTC
AGAACAACTGACACCGGCCGTGTATTTACTCCACTTAATAGAAGCACCTCTGATCAGGCTGGGT
GATCTTCTCCGTCAGCTTTTTACATCATATCTACTCCGCCAAGTTGCATCCACGGATGTAAGGG
TGATCATACTTTATATACCTTGTCCAATATGGTCTGTACTTGGTCATTGCTAACTCCAGCCATG
GCTTCATGTTACCGTTGTAATGAACAACAGCAGCATTATCTATCTCTGAGCGATCAATGCTTGG
GTTGTATCCTAATCCAAGGACATGCCACGACTTGTCAAGGGGATGCGTCAACTTGTAGAAGGTT
AAGAGGCCAGGTGGAAGTGTCCCAAGCTTCCAAAGAACCCGGTCTTCATT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021