Detail information of BGIOSGA014898_circ_ag.1


General Information
CircRNA Name BGIOSGA014898_circ_ag.1
ID in PlantcircBase osi_circ_005554
Alias 4:22097127|22113611
Organism Oryza sativa ssp. indica
Position chr4: 22097127-22113611  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ag-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing BGIOSGA014896_circ_g.1 BGIOSGA014896_circ_igg.1 BGIOSGA014895_circ_g.1
Support reads NA
Tissues leaf
Exon boundary   NA-NA
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATCCACAAAGTTTATCCCAAACCGAACTGTGTAGCCCTCTGCCCACTCAAAGTTGTCAAGCAGA
GACCATGCAAAGTACCCCTTCACGTTTGCTCCATCCctcatagcatttcgcagggcgagaaggt
gcttgtgataatattctatcctcgtattatcattcagggcctccttgagtggcatggtcttgtt
attgactt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TOO LONG (>5KB) TO SHOW GENOMIC SEQUENCE OF THIS CIRCULAR RNA. PLEASE FIND THE CORRESPONDING GENOMIC SEQUENCE AT DOWNLOAD SECTION.
Conservation Information
Conserved circRNAs osa_circ_024172* osa_circ_024171* osa_circ_024180* osa_circ_024173*
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs osa-miR2864.2 osa-miR2868
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021