Plant Circular RNA Database

Detail information of Zm00001d024027_circ_g.84

			
						 General Information
					
						CircRNA Name
						Zm00001d024027_circ_g.84
					
						ID in PlantcircBase
						zma_circ_006162
					
						Alias
						seedlingd_test_circ_001460
					
						Organism
						
							Zea mays						
					
						Position
						
							chr10: 37880100-37880400  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							e-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Zm00001d024027						
					
						Parent gene annotation
						
							 proline rich cell wall protein1
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Zm00001d024027_circ_g.1 Zm00001d024027_circ_g.2 Zm00001d024027_circ_g.3 Zm00001d024027_circ_g.4 Zm00001d024027_circ_g.5 Zm00001d024027_circ_g.6 Zm00001d024027_circ_g.7 Zm00001d024027_circ_g.8 Zm00001d024027_circ_g.9 Zm00001d024027_circ_g.10 Zm00001d024027_circ_g.11 Zm00001d024027_circ_g.12 Zm00001d024027_circ_g.13 Zm00001d024027_circ_g.14 Zm00001d024027_circ_g.15 Zm00001d024027_circ_g.16 Zm00001d024027_circ_g.17 Zm00001d024027_circ_g.18 Zm00001d024027_circ_g.19 Zm00001d024027_circ_g.20 Zm00001d024027_circ_g.21 Zm00001d024027_circ_g.22 Zm00001d024027_circ_g.23 Zm00001d024027_circ_g.24 Zm00001d024027_circ_g.25 Zm00001d024027_circ_g.26 Zm00001d024027_circ_g.27 Zm00001d024027_circ_g.28 Zm00001d024027_circ_g.29 Zm00001d024027_circ_g.30 Zm00001d024027_circ_g.31 Zm00001d024027_circ_g.32 Zm00001d024027_circ_g.33 Zm00001d024027_circ_g.34 Zm00001d024027_circ_g.35 Zm00001d024027_circ_g.36 Zm00001d024027_circ_g.37 Zm00001d024027_circ_g.38 Zm00001d024027_circ_g.39 Zm00001d024027_circ_g.40 Zm00001d024027_circ_g.41 Zm00001d024027_circ_g.42 Zm00001d024027_circ_g.43 Zm00001d024027_circ_g.44 Zm00001d024027_circ_g.45 Zm00001d024027_circ_g.46 Zm00001d024027_circ_g.47 Zm00001d024027_circ_g.48 Zm00001d024027_circ_g.49 Zm00001d024027_circ_g.50 Zm00001d024027_circ_g.51 Zm00001d024027_circ_g.52 Zm00001d024027_circ_g.53 Zm00001d024027_circ_g.54 Zm00001d024027_circ_g.55 Zm00001d024027_circ_g.56 Zm00001d024027_circ_g.57 Zm00001d024027_circ_g.58 Zm00001d024027_circ_g.59 Zm00001d024027_circ_g.60 Zm00001d024027_circ_g.61 Zm00001d024027_circ_g.62 Zm00001d024027_circ_g.63 Zm00001d024027_circ_g.64 Zm00001d024027_circ_g.65 Zm00001d024027_circ_g.66 Zm00001d024027_circ_g.67 Zm00001d024027_circ_g.68 Zm00001d024027_circ_g.69 Zm00001d024027_circ_g.70 Zm00001d024027_circ_g.71 Zm00001d024027_circ_g.72 Zm00001d024027_circ_g.73 Zm00001d024027_circ_g.74 Zm00001d024027_circ_g.75 Zm00001d024027_circ_g.76 Zm00001d024027_circ_g.77 Zm00001d024027_circ_g.78 Zm00001d024027_circ_g.79 Zm00001d024027_circ_g.80 Zm00001d024027_circ_g.81 Zm00001d024027_circ_g.82 Zm00001d024027_circ_g.83 Zm00001d024027_circ_g.85 Zm00001d024027_circ_g.86 Zm00001d024027_circ_g.87 Zm00001d024027_circ_g.88 Zm00001d024027_circ_g.89 Zm00001d024027_circ_g.90 Zm00001d024027_circ_g.91 Zm00001d024027_circ_g.92 Zm00001d024027_circ_g.93 Zm00001d024027_circ_g.94 Zm00001d024027_circ_g.95 Zm00001d024027_circ_g.96 Zm00001d024027_circ_g.97 Zm00001d024027_circ_g.98 Zm00001d024027_circ_g.99 Zm00001d024027_circ_g.100 Zm00001d024027_circ_g.101 Zm00001d024027_circ_g.102 Zm00001d024027_circ_g.103 Zm00001d024027_circ_g.104 Zm00001d024027_circ_g.105 Zm00001d024027_circ_g.106 Zm00001d024027_circ_g.107 Zm00001d024027_circ_g.108 Zm00001d024027_circ_g.109 Zm00001d024027_circ_g.110 Zm00001d024027_circ_g.111 Zm00001d024027_circ_g.112 Zm00001d024027_circ_g.113 Zm00001d024027_circ_g.114 Zm00001d024027_circ_g.115 Zm00001d024027_circ_g.116 Zm00001d024027_circ_g.117 Zm00001d024027_circ_g.118 Zm00001d024027_circ_g.119 Zm00001d024027_circ_g.120 Zm00001d024027_circ_g.121 Zm00001d024027_circ_g.122 Zm00001d024027_circ_g.123 Zm00001d024027_circ_g.124 Zm00001d024027_circ_g.125 Zm00001d024027_circ_g.126 Zm00001d024027_circ_g.127 Zm00001d024027_circ_g.128 Zm00001d024027_circ_g.129 Zm00001d024027_circ_g.130 Zm00001d024027_circ_g.131 Zm00001d024027_circ_g.132 Zm00001d024027_circ_g.133 Zm00001d024027_circ_g.134 Zm00001d024027_circ_g.135 Zm00001d024027_circ_g.136 Zm00001d024027_circ_g.137 Zm00001d024027_circ_g.138 Zm00001d024027_circ_g.139 Zm00001d024027_circ_g.140 Zm00001d024027_circ_g.141 Zm00001d024027_circ_g.142 						
					
						Support reads
						NA
					
						Tissues
						seedling
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-TA							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d024027_T001:1

General Information
CircRNA Name	Zm00001d024027_circ_g.84
ID in PlantcircBase	zma_circ_006162
Alias	seedlingd_test_circ_001460
Organism	Zea mays
Position	chr10: 37880100-37880400 JBrowse»
Reference genome	AGPv4.38
Type	e-circRNA
Identification method	find_circ
Parent gene	Zm00001d024027
Parent gene annotation	proline rich cell wall protein1
Parent gene strand	-
Alternative splicing	Zm00001d024027_circ_g.1 Zm00001d024027_circ_g.2 Zm00001d024027_circ_g.3 Zm00001d024027_circ_g.4 Zm00001d024027_circ_g.5 Zm00001d024027_circ_g.6 Zm00001d024027_circ_g.7 Zm00001d024027_circ_g.8 Zm00001d024027_circ_g.9 Zm00001d024027_circ_g.10 Zm00001d024027_circ_g.11 Zm00001d024027_circ_g.12 Zm00001d024027_circ_g.13 Zm00001d024027_circ_g.14 Zm00001d024027_circ_g.15 Zm00001d024027_circ_g.16 Zm00001d024027_circ_g.17 Zm00001d024027_circ_g.18 Zm00001d024027_circ_g.19 Zm00001d024027_circ_g.20 Zm00001d024027_circ_g.21 Zm00001d024027_circ_g.22 Zm00001d024027_circ_g.23 Zm00001d024027_circ_g.24 Zm00001d024027_circ_g.25 Zm00001d024027_circ_g.26 Zm00001d024027_circ_g.27 Zm00001d024027_circ_g.28 Zm00001d024027_circ_g.29 Zm00001d024027_circ_g.30 Zm00001d024027_circ_g.31 Zm00001d024027_circ_g.32 Zm00001d024027_circ_g.33 Zm00001d024027_circ_g.34 Zm00001d024027_circ_g.35 Zm00001d024027_circ_g.36 Zm00001d024027_circ_g.37 Zm00001d024027_circ_g.38 Zm00001d024027_circ_g.39 Zm00001d024027_circ_g.40 Zm00001d024027_circ_g.41 Zm00001d024027_circ_g.42 Zm00001d024027_circ_g.43 Zm00001d024027_circ_g.44 Zm00001d024027_circ_g.45 Zm00001d024027_circ_g.46 Zm00001d024027_circ_g.47 Zm00001d024027_circ_g.48 Zm00001d024027_circ_g.49 Zm00001d024027_circ_g.50 Zm00001d024027_circ_g.51 Zm00001d024027_circ_g.52 Zm00001d024027_circ_g.53 Zm00001d024027_circ_g.54 Zm00001d024027_circ_g.55 Zm00001d024027_circ_g.56 Zm00001d024027_circ_g.57 Zm00001d024027_circ_g.58 Zm00001d024027_circ_g.59 Zm00001d024027_circ_g.60 Zm00001d024027_circ_g.61 Zm00001d024027_circ_g.62 Zm00001d024027_circ_g.63 Zm00001d024027_circ_g.64 Zm00001d024027_circ_g.65 Zm00001d024027_circ_g.66 Zm00001d024027_circ_g.67 Zm00001d024027_circ_g.68 Zm00001d024027_circ_g.69 Zm00001d024027_circ_g.70 Zm00001d024027_circ_g.71 Zm00001d024027_circ_g.72 Zm00001d024027_circ_g.73 Zm00001d024027_circ_g.74 Zm00001d024027_circ_g.75 Zm00001d024027_circ_g.76 Zm00001d024027_circ_g.77 Zm00001d024027_circ_g.78 Zm00001d024027_circ_g.79 Zm00001d024027_circ_g.80 Zm00001d024027_circ_g.81 Zm00001d024027_circ_g.82 Zm00001d024027_circ_g.83 Zm00001d024027_circ_g.85 Zm00001d024027_circ_g.86 Zm00001d024027_circ_g.87 Zm00001d024027_circ_g.88 Zm00001d024027_circ_g.89 Zm00001d024027_circ_g.90 Zm00001d024027_circ_g.91 Zm00001d024027_circ_g.92 Zm00001d024027_circ_g.93 Zm00001d024027_circ_g.94 Zm00001d024027_circ_g.95 Zm00001d024027_circ_g.96 Zm00001d024027_circ_g.97 Zm00001d024027_circ_g.98 Zm00001d024027_circ_g.99 Zm00001d024027_circ_g.100 Zm00001d024027_circ_g.101 Zm00001d024027_circ_g.102 Zm00001d024027_circ_g.103 Zm00001d024027_circ_g.104 Zm00001d024027_circ_g.105 Zm00001d024027_circ_g.106 Zm00001d024027_circ_g.107 Zm00001d024027_circ_g.108 Zm00001d024027_circ_g.109 Zm00001d024027_circ_g.110 Zm00001d024027_circ_g.111 Zm00001d024027_circ_g.112 Zm00001d024027_circ_g.113 Zm00001d024027_circ_g.114 Zm00001d024027_circ_g.115 Zm00001d024027_circ_g.116 Zm00001d024027_circ_g.117 Zm00001d024027_circ_g.118 Zm00001d024027_circ_g.119 Zm00001d024027_circ_g.120 Zm00001d024027_circ_g.121 Zm00001d024027_circ_g.122 Zm00001d024027_circ_g.123 Zm00001d024027_circ_g.124 Zm00001d024027_circ_g.125 Zm00001d024027_circ_g.126 Zm00001d024027_circ_g.127 Zm00001d024027_circ_g.128 Zm00001d024027_circ_g.129 Zm00001d024027_circ_g.130 Zm00001d024027_circ_g.131 Zm00001d024027_circ_g.132 Zm00001d024027_circ_g.133 Zm00001d024027_circ_g.134 Zm00001d024027_circ_g.135 Zm00001d024027_circ_g.136 Zm00001d024027_circ_g.137 Zm00001d024027_circ_g.138 Zm00001d024027_circ_g.139 Zm00001d024027_circ_g.140 Zm00001d024027_circ_g.141 Zm00001d024027_circ_g.142
Support reads	NA
Tissues	seedling
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-TA The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d024027_T001:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
						 Sequences
					
						Splice junction sequence  
						
							TTGGATTTTGGTTGAGGCTTGGGCATTGGTTGAGGTTCAGGGTTGGGCTTTGGTTGAGGTTCAG
GCTTTGGCTCTGGATGTGGCATAGGTTTCGGTTTAGggctctggttttggttgtggctctggct
ttggctctggtttcggtttgggtttaggctctggctttggctcaggtttatgctctggcttagg
ctctggtt

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

						Full-length trsnacripts
						
							NA						
					
						Genomic sequence
						
							GGCTCTGGTTTTGGTTGTGGCTCTGGCTTTGGCTCTGGTTTCGGTTTGGGTTTAGGCTCTGGCT
TTGGCTCAGGTTTATGCTCTGGCTTAGGCTCTGGTTTTGGTTCAGGTTTTGGCTTTGGTTTTAT
TTTAGGTTCGGGCTTAGGCTCTGGCTTAGGTTCGGGCTTAGGTTCAGGCTTCGGTGTAGGCAAT
GGCTCTGGTTTGGATTTTGGTTGAGGCTTGGGCATTGGTTGAGGTTCAGGGTTGGGCTTTGGTT
GAGGTTCAGGCTTTGGCTCTGGATGTGGCATAGGTTTCGGTTTAG

Sequences
Splice junction sequence	TTGGATTTTGGTTGAGGCTTGGGCATTGGTTGAGGTTCAGGGTTGGGCTTTGGTTGAGGTTCAG GCTTTGGCTCTGGATGTGGCATAGGTTTCGGTTTAGggctctggttttggttgtggctctggct ttggctctggtttcggtttgggtttaggctctggctttggctcaggtttatgctctggcttagg ctctggtt
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GGCTCTGGTTTTGGTTGTGGCTCTGGCTTTGGCTCTGGTTTCGGTTTGGGTTTAGGCTCTGGCT TTGGCTCAGGTTTATGCTCTGGCTTAGGCTCTGGTTTTGGTTCAGGTTTTGGCTTTGGTTTTAT TTTAGGTTCGGGCTTAGGCTCTGGCTTAGGTTCGGGCTTAGGTTCAGGCTTCGGTGTAGGCAAT GGCTCTGGTTTGGATTTTGGTTGAGGCTTGGGCATTGGTTGAGGTTCAGGGTTGGGCTTTGGTT GAGGTTCAGGCTTTGGCTCTGGATGTGGCATAGGTTTCGGTTTAG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.043743079

Conservation Information
Conserved circRNAs	NA
PMCS	0.043743079

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Tang et al., 2018

circRNA

Detail information of Zm00001d024027_circ_g.84

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