Detail information of BGIOSGA006305_circ_g.1


General Information
CircRNA Name BGIOSGA006305_circ_g.1
ID in PlantcircBase osi_circ_011834
Alias Chr02:20955314_20960915(ZS97RS2)
Organism Oryza sativa ssp. indica
Position chr2: 21510595-21515107  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ie-circRNA
Identification method CIRCexplorer2
Parent gene BGIOSGA006305
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   NN-TA
Number of exons covered BGIOSGA006305-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTACTAGGGCTGTAATTTGGAACGTTATGCCTAAAAATTCCACTTTCCTAATGCTCGTGGGTT
CATTGTTCAAAATCCCTGAAAACCTTTAGAACCTATcccatatctcaagttctctgaaagtagg
ggcattctgaaatattgaacaagcacccaagacctctgtccagttccaaaagcacttctcaata
caaatctt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCATATCTCAAGTTCTCTGAAAGTAGGGGCATTCTGAAATATTGAACAAGCACCCAAGACCTC
TGTCCAGTTCCAAAAGCACTTCTCAATACAAATCTTCTTCAGATGATCAAACACACCTGGGAGT
TGCATCGACAAGCACCCTTTGGATAGATACTGCTACCAGAATAAAACCAATGAGAATTACCAAT
AAAATTTAATCAGCATGATAGTTAAATAAAGCAAAACTAATAATATGTTACCGTCAAGAATGAG
CCACTTATAGTAAGTTCTTCTATACTAGTTAGGCTGACAAAAGCTTGCTTCATGTAGTTTTTCA
TGTCACCTACAACTGCCACAGACTGTTGGGCTTCTGTTTTGTCGAGTGTAATATACACATGGGA
CAGATTAGGTGCATTCAGATGAAAGTCCTCAAATTTCCCTTCAACCTCTACAATCTGCAGTACC
TGGCCTTCAATACGGAGACAACTGATACCATCGAAATGTTTCAAACGCAATGTATTCAACCAAG
GGCATGAGGAGACCAGAGTATTTATATCATGGTCTGTTGAGGAGAAATATTTCAGATTCAAGAC
AAATAGCTGCTTGAAACCTTCAAACTCCTGAGGCAAGGCAATGATGCATCTTTTCATAACAAGT
CTTACTATGCTAGTTAGGCTGACCATAGCTTGCTTCAGATAATTTTTCCTGTTGCCTTCAACTA
CAACAGATTGTTGGGCTTCTGTTTTGTCAAGTGAAACATCTAAATTGGACAGATTAGGTGCATG
CAGATGAAAATCTTGAAAGTTCCCTTTAACCTCTAAATCCTGCAGTGCTGGAGCTTGAATACTG
AGACAAGTGATACCCTCGAAATATTTCAAACATAATGTACTCAGCAAGGGGCATGAGGAGATCA
GATTATTTATGTCACTGTCTGTTGAGGAGAAATATTTCAGATTCAGGACAGTTAGCCGCTTGAA
ACCTTCAAACTCCTGAGGCAAACCGATGATGCATCTTTTTATCTGCAGATATTCCAAATCACTG
AGAGAGAAGAGGTTTGACGGGATCTTATAGTTATGCCCAGAGTAAAACTTGATTGTAATGGACC
TTGGTTTTTTCCTTGACAGCATGTACATCCACCTATCAAATACATCATGGTATCTTTTGAACCC
TAGAATTGAAAAGGAAGCAAGAGGTCCATTGTGGAGCAAAAGGGCCAGATCGACGAGCGTAATA
AAGTTGGAGCGTTGTGTCGTTTCAGAGGAACCCCAGCTGAGATACAAATCACAAAGATATATTT
CTGGCAAAGTAGTCCACACATTCCTCCAAGCACTGGATAGGATGCTGGCTCTAATAGCATCTAA
GGAATTCAGCTTGGAGAGGATGGTGACCTTTATCTCTTGAGGTAGGCTGCTGAATTTGTCTGAC
CTCAACGCAGATGATGGTTCCACCTTTGCCTTTTTAGCACGATGCATCGCTCCAGAGACGATTA
TAGTGACCTCGCAATTGTCGAACATCTTGGTGTAGATTATACACACATCAAGTAAAAAAAAAAA
AAGGAAGCAGAAATCAATACACTGAAGACACTCAAGAGCATATAGGTACTAAATATGGCAAACA
ATATGTGAAGCTCAAACCATACAGATGATACAGTAATAGGAGCAAGTGGCATTATGATTCAATT
AATTACGAGCATACATGCTCATCCTATACACTATTGCACTGCCTATTTCCAAAAGACCAAAAGA
CCAAAACACACACACACACACACACACTAGAAATCGCTGTGGTTCTCGAAGTTGGAATCGCCAT
CGCAACGCTGCTTAAATTAGTGGGGATAGTCCCGTTGCTCTAAAACACTACAAATCGTTGCCTA
CTAGTACAACTAGTATATATGGATTTGGGACACGCACAGGATCTGCCTCAAGAGCAACAGATTT
GCATCAGGATGGATCGATTTTCGCTTGGCACGAGGAAAATGGGAGGGGAGGGGGGCGGAATGCG
CGCCGAGCGACGAGCGAGCGATATACCTAGGGTTTCTGGAGAGTTGGAGCGGACGGGCACGGGG
AGCAGCGGGTCGCCACGACGCTCCTCCCCCTTCCGCCGCCGTGACGGTGTCGATCTTTAGGGCT
TCGCTCGTCCTGCAATGGCGGCGCTTGACAAGCGCCGCTACCAGTGAGGCAGGGAACGAACAGT
TCGGGGCCGGAAAAGAGATAATAACACGGCGGATTTGCTTGAAAACTTTCACAAGTTTTTCCCC
CAAAACTTTCATATTTGTGACATCGTATCGCCTCAAGATTTATATATAAAGAGAAAAAAATTGC
TAGAAAAAAATTTCACACATGTCATGTGTAAGATACCAATGCTATCTAACTAAAGCATTGTTTT
TTTCGATGAATAACTAAAGCATTGTTAAATGTAAGTTTTAATAAGTTATATCGTAGCTATAATG
CAATTACAATATAATTACACTTCAATTATACCATCGTTATATCGGAAAATTTTTAACCAAAAGT
CTTGCGACAGTTTCTTAGATACTCCCTTAACATAATATTCGGGACATTTAACTATTTGTCATTT
GATCTATATATTATAGACCAATGATGACTCTAACAAATAATTAAATACCACATATAAAAATAGT
AAATAGTTAAATGTGCCAGAAAAAAAAGAAGACTACTTGTGAAACATCAAGCCCATTTGCATTC
AACTTTGCTAGACGTGTTAGCAAATTTTTTATTTTGGAGTGGTGGGGGTAGAGGGAGGGGGTTG
TTGAAAAAAAGAGCGAATGAATTTATTTTATGAAAAGTTTTTATGCATAATGTTATAGTTATAC
TAAGGTAAGACCTACTACCTTGGTAAGAAAGGTTGGACATAGAATTATAAGAAAGAAGATGAAA
TTAAATTGAAGAAGGTTGTAATTAGTTGAGGAAGAGGAAATAAATAGAGAAATTAAAAGGTGGA
AGATTTCGATTGGTTGATAAGATAATATAGGTAAAGAAGGTGTTATATTTTGAAATAAAGGTTA
AATGTTAGAAGTTGTTATATTTTAGGATGGAATAAGTACTTATTTACTTTTACTTTGCACTAGA
GAGCTTTGCAAAACATTTCGCTGTGAACCACTCTTTTCGTATTCACCCTCTTTGTGTTGTCTCT
CACTTCTTAACTTCTAGCGCTAGTGACTAGTGAGCAATGTCATCCCCGTTGGCCACATGTATAT
GTGAATAGAGGTTGAAAGTAAAGTAAATAGCTCGTTGTACAAAACAAGTATAATTGTATTAGGT
TTTTTTTTTTGCGCTTCAGTTCCACCTCTTTTTAAATTAGATCCTAACCAAATAGACTCAGCTT
ACGGTGGGTTGAAATGATTTGAAAAAAATGAATAGAGGATTGTAGCAAGGTTCTAGCCGCTCCG
CAGCTCTACTCCAAACTACGGTCCTGAGTTAAATTTAGAAGTTAGGGCCATACCAAATACTAGA
AAAGACTACTTGTGAGGCATTAACAACCCTTGTTTGCTCTTCAACTTTTCTATGCATGTTTTAA
CGTTTTCTCCAAAAATATACATTGTGACATATTTTTACTTAATTGACACATTAGTAAATATGAA
TTTAAGCCTAACAATTAGTTATTTACTAGTATGATTCAAATTATATTCAGGCATAAAAAAATAT
ATTTGTGAGAGAATTCATTTTTCATTTGGATTAGCTATGAATTTTCAAATATTGCATTCAAATT
TAATTCGTGGAAATTTAACTGTGCGCCACTTGATGAGCTCGTCGGATTTATAAGTTGGACAAAA
TCGACTTGCGGCTGGGGTGGCGCCGGCCGGCACGGGCGCGAAGACGTCCAGGTGCTCGTGCGGG
TGCCTTGGGCTGGCATGGCATTCGGCTGTGCTAAACCAACGTCGAACACCTGGTGTGCAAGGGA
CAGATTTGAACCACCCTCCACACTCTGGAAGTTGGAAAATCCAAATCATTAGATTGATTTGGAT
TTTTTTTTCAATTTTCCCTTGAATAACGGGATTTCTTTAAACAGATGATTTAATTGGTTTGGAT
TACTTTATGTTCTTTATTGGGATAGACAAATAATTTCACAAATATTTGGATCTTATTTCTCCTT
ACTTCAATACTATTTATATAATTTACCGTAAAGAGATATTTTAGTTCCTATTCAAACTAATTGG
GTCTTTATGATTGGTTAATATTTTGGGAATGGAACATTTTGTGCACACTCGTATTTATATATTT
TTCATCAATGCATTCTTTAATTCACTCCACATATTTCCAGTTGTACCTTTATTGTTTTCCATAA
CCATGATTCACTTCACTTCTATATGTTCGATTAGATTTAATATACCGACATGCAAAGAAAACAG
TAAAAAAAATGCAGCAAGATGTAAAAAAGCAAACTTCCACATATTTTTATTATCCGGATTATCT
ACTAGGGCTGTAATTTGGAACGTTATGCCTAAAAATTCCACTTTCCTAATGCTCGTGGGTTCAT
TGTTCAAAATCCCTGAAAACCTTTAGAACCTAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021