Plant Circular RNA Database

Detail information of Os02g0614500_circ_g.2

			
						 General Information
					
						CircRNA Name
						Os02g0614500_circ_g.2
					
						ID in PlantcircBase
						osa_circ_015508
					
						Alias
						Os02circ18448
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 24271521-24272883  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							u-circRNA							
									
						Identification method
						CIRCexplorer, SMALT, Segemehl
					
						Parent gene
						
							Os02g0614500						
					
						Parent gene annotation
						
							Protein of unknown function DUF250 domain containing protein. (O
s02t0614500-01);Similar to integral membrane protein like. (Os02
t0614500-02)
							
						Parent gene strand
						-
					
						Alternative splicing
						
							Os02g0614500_circ_g.1 Os02g0614500_circ_g.3 						
					
						Support reads
						2/1
					
						Tissues
						panicle/shoot, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							CT-AC							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0614500-01:4
Os02t0614500-02:1

General Information
CircRNA Name	Os02g0614500_circ_g.2
ID in PlantcircBase	osa_circ_015508
Alias	Os02circ18448
Organism	Oryza sativa
Position	chr2: 24271521-24272883 JBrowse»
Reference genome	IRGSP-1.0.38
Type	u-circRNA
Identification method	CIRCexplorer, SMALT, Segemehl
Parent gene	Os02g0614500
Parent gene annotation	Protein of unknown function DUF250 domain containing protein. (O s02t0614500-01);Similar to integral membrane protein like. (Os02 t0614500-02)
Parent gene strand	-
Alternative splicing	Os02g0614500_circ_g.1 Os02g0614500_circ_g.3
Support reads	2/1
Tissues	panicle/shoot, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	CT-AC The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0614500-01:4 Os02t0614500-02:1

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TCACAACGTTGAACATCCATGCTCCAGCATCCAGCACTGCTTTTCTCTCTGCTTTGTTTGCTGG
TGCCATACTTTCTTATCATGTAGAGTACAATCCGATcgtaactattgttgtgtaattgaaagta
tcaactcttctattggtcagccagaagtccacaaaaggccccagtattaacagggatgctgcct
gagctgga

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 708
Transcript exons: 24271521-24271682,24272101-24272301,24272384-24272568,24
272724-24272883
CGTAACTATTGTTGTGTAATTGAAAGTATCAACTCTTCTATTGGTCAGCCAGAAGTCCACAAAA
GGCCCCAGTATTAACAGGGATGCTGCCTGAGCTGGAGCAGTATGACCCAATAGGTTGAATGAGC
CAAGCGAGTACTTCTTTTGAAGGTGATGAACGTAATGCTGCTGTAGTGCTGTGCTCCAAACTGC
AATTACAGCTGCTAGCAGCCCTTTTGAATTCACACTAACATCAGTCACAGTACATACAGCAACT
CCTACTAAAACAAGCACTATACTGAGTTTTGTATTCCTTGAGTAACGGACTTTGTCAAACAGGA
TTTCCAGAATGCACAAGACTGGAATAATACACAACTTGGCAATCTGATAGAATCCAACAGAGTT
CCACATCAAACTAACATTCATCCCAACAATTGATAAGTTTGCAAAAAAGACGAATTTAACGAGT
TCTGGCAATGGTAAATAGGATGGCTGAATATGTCCCAACCATTTCATTACTAATGTCATCAAGG
TTGTGGTTGCAAAATGCAATCCAGTCAATGTTGTAGCAAAACTAAAACCATGTGTGGCCATTAA
TGCCTTGTTGACCATGATGATACCAACTGATGTCACAACGTTGAACATCCATGCTCCAGCATCC
AGCACTGCTTTTCTCTCTGCTTTGTTTGCTGGTGCCATACTTTCTTATCATGTAGAGTACAATC
CGAT
						
					

						Genomic sequence
						
							CGTAACTATTGTTGTGTAATTGAAAGTATCAACTCTTCTATTGGTCAGCCAGAAGTCCACAAAA
GGCCCCAGTATTAACAGGGATGCTGCCTGAGCTGGAGCAGTATGACCCAATAGGTTGAATGAGC
CAAGCGAGTACTTCTTTTGAAGGTGATGAACGTACTGCAGCATGAAAGAAAAATAACTGGAATA
AAACAAGTGCTAATTATCCAAAACCTCACCATTAAAAGTGAAAACAGCAGCGAGGGACAAAATT
TCTGTTAGCAGATAAATGAGTAAGACTAAATATTTGCAACTCTTTTAGATACAAGTTACTATTG
AACATTTCCTTTGAACATGAGTAATCAGTACAGCAGTTAGAAGCAAGCAAATATCGACAGAAAT
CCAGATTACAGAATGAGATAAATCAGACTGAATTCACACGAACAGTTTGGAAAATATGTAAATG
TAATGTACCATATGCGACGTAATTTGAACTGAAACTGCTCATTCAGAAGCCAAGGTATTTAAAA
AGGAGCCAAACAGAGCAGTTATCACTAGGGCATGGAATACGTCAAAATGTGCACAATCAAATAC
TCACATGCTGCTGTAGTGCTGTGCTCCAAACTGCAATTACAGCTGCTAGCAGCCCTTTTGAATT
CACACTAACATCAGTCACAGTACATACAGCAACTCCTACTAAAACAAGCACTATACTGAGTTTT
GTATTCCTTGAGTAACGGACTTTGTCAAACAGGATTTCCAGAATGCACAAGACTGGAATAATAC
ACAACTTGGCAATCTGAAGAGGCATGAAACGAAAATTAGTATGTGCCCTCCATTCTAACATTGA
ATATAGAAGGATTTAAAATTACTCTTCCCACCTGATAGAATCCAACAGAGTTCCACATCAAACT
AACATTCATCCCAACAATTGATAAGTTTGCAAAAAAGACGAATTTAACGAGTTCTGGCAATGGT
AAATAGGATGGCTGAATATGTCCCAACCATTTCATTACTAATGTCATCAAGGTTGTGGTTGCAA
AATGCAATCCAGTCAATGTTGTAGCTGCACAAACACACAATGGAACACATCATTAGCACAAAAA
ATCTGACTGGTTTGCTGCACAACGATAGTTCGGTTTAGTCCAACTATCCATAAGACGTGCGGAC
AAGGCATTCTTGACAATTCAACCACGAGTGAGGAATTATAGCATGTCTTACCAAAACTAAAACC
ATGTGTGGCCATTAATGCCTTGTTGACCATGATGATACCAACTGATGTCACAACGTTGAACATC
CATGCTCCAGCATCCAGCACTGCTTTTCTCTCTGCTTTGTTTGCTGGTGCCATACTTTCTTATC
ATGTAGAGTACAATCCGAT
						
					

			
		

Sequences
Splice junction sequence	TCACAACGTTGAACATCCATGCTCCAGCATCCAGCACTGCTTTTCTCTCTGCTTTGTTTGCTGG TGCCATACTTTCTTATCATGTAGAGTACAATCCGATcgtaactattgttgtgtaattgaaagta tcaactcttctattggtcagccagaagtccacaaaaggccccagtattaacagggatgctgcct gagctgga
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 708 Transcript exons: 24271521-24271682,24272101-24272301,24272384-24272568,24 272724-24272883 CGTAACTATTGTTGTGTAATTGAAAGTATCAACTCTTCTATTGGTCAGCCAGAAGTCCACAAAA GGCCCCAGTATTAACAGGGATGCTGCCTGAGCTGGAGCAGTATGACCCAATAGGTTGAATGAGC CAAGCGAGTACTTCTTTTGAAGGTGATGAACGTAATGCTGCTGTAGTGCTGTGCTCCAAACTGC AATTACAGCTGCTAGCAGCCCTTTTGAATTCACACTAACATCAGTCACAGTACATACAGCAACT CCTACTAAAACAAGCACTATACTGAGTTTTGTATTCCTTGAGTAACGGACTTTGTCAAACAGGA TTTCCAGAATGCACAAGACTGGAATAATACACAACTTGGCAATCTGATAGAATCCAACAGAGTT CCACATCAAACTAACATTCATCCCAACAATTGATAAGTTTGCAAAAAAGACGAATTTAACGAGT TCTGGCAATGGTAAATAGGATGGCTGAATATGTCCCAACCATTTCATTACTAATGTCATCAAGG TTGTGGTTGCAAAATGCAATCCAGTCAATGTTGTAGCAAAACTAAAACCATGTGTGGCCATTAA TGCCTTGTTGACCATGATGATACCAACTGATGTCACAACGTTGAACATCCATGCTCCAGCATCC AGCACTGCTTTTCTCTCTGCTTTGTTTGCTGGTGCCATACTTTCTTATCATGTAGAGTACAATC CGAT
Genomic sequence	CGTAACTATTGTTGTGTAATTGAAAGTATCAACTCTTCTATTGGTCAGCCAGAAGTCCACAAAA GGCCCCAGTATTAACAGGGATGCTGCCTGAGCTGGAGCAGTATGACCCAATAGGTTGAATGAGC CAAGCGAGTACTTCTTTTGAAGGTGATGAACGTACTGCAGCATGAAAGAAAAATAACTGGAATA AAACAAGTGCTAATTATCCAAAACCTCACCATTAAAAGTGAAAACAGCAGCGAGGGACAAAATT TCTGTTAGCAGATAAATGAGTAAGACTAAATATTTGCAACTCTTTTAGATACAAGTTACTATTG AACATTTCCTTTGAACATGAGTAATCAGTACAGCAGTTAGAAGCAAGCAAATATCGACAGAAAT CCAGATTACAGAATGAGATAAATCAGACTGAATTCACACGAACAGTTTGGAAAATATGTAAATG TAATGTACCATATGCGACGTAATTTGAACTGAAACTGCTCATTCAGAAGCCAAGGTATTTAAAA AGGAGCCAAACAGAGCAGTTATCACTAGGGCATGGAATACGTCAAAATGTGCACAATCAAATAC TCACATGCTGCTGTAGTGCTGTGCTCCAAACTGCAATTACAGCTGCTAGCAGCCCTTTTGAATT CACACTAACATCAGTCACAGTACATACAGCAACTCCTACTAAAACAAGCACTATACTGAGTTTT GTATTCCTTGAGTAACGGACTTTGTCAAACAGGATTTCCAGAATGCACAAGACTGGAATAATAC ACAACTTGGCAATCTGAAGAGGCATGAAACGAAAATTAGTATGTGCCCTCCATTCTAACATTGA ATATAGAAGGATTTAAAATTACTCTTCCCACCTGATAGAATCCAACAGAGTTCCACATCAAACT AACATTCATCCCAACAATTGATAAGTTTGCAAAAAAGACGAATTTAACGAGTTCTGGCAATGGT AAATAGGATGGCTGAATATGTCCCAACCATTTCATTACTAATGTCATCAAGGTTGTGGTTGCAA AATGCAATCCAGTCAATGTTGTAGCTGCACAAACACACAATGGAACACATCATTAGCACAAAAA ATCTGACTGGTTTGCTGCACAACGATAGTTCGGTTTAGTCCAACTATCCATAAGACGTGCGGAC AAGGCATTCTTGACAATTCAACCACGAGTGAGGAATTATAGCATGTCTTACCAAAACTAAAACC ATGTGTGGCCATTAATGCCTTGTTGACCATGATGATACCAACTGATGTCACAACGTTGAACATC CATGCTCCAGCATCCAGCACTGCTTTTCTCTCTGCTTTGTTTGCTGGTGCCATACTTTCTTATC ATGTAGAGTACAATCCGAT

			
						 Conservation Information
					
						Conserved circRNAs
						
							osi_circ_004098* osi_circ_012006 						
					
						PMCS
						0.311947316

Conservation Information
Conserved circRNAs	osi_circ_004098* osi_circ_012006
PMCS	0.311947316

			
						 Functional Information
					
						Coding potential
						Y
					
						Potential coding position
						
							24272766-24271536(+)
24272855-24272865(-)
						
						Potential amino acid sequence
						
							MMIPTDVTTLNIHAPASSTAFLSALFAGAILSYHVEYNPIVTIVV*(+)
MAPANKAERKAVLDAGAWMFNVVTSVGIIMVNKALMATHGFSFATTLTGLHFATTTLMTLVMKW
LGHIQPSYLPLPELVKFVFFANLSIVGMNVSLMWNSVGFYQIAKLCIIPVLCILEILFDKVRYS
RNTKLSIVLVLVGVAVCTVTDVSVNSKGLLAAVIAVWSTALQQHYVHHLQKKYSLGSFNLLGHT
APAQAASLLILGPFVDFWLTNRRVDTFNYTTIVTIGLYST*(-)
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	Y
Potential coding position	24272766-24271536(+) 24272855-24272865(-)
Potential amino acid sequence	MMIPTDVTTLNIHAPASSTAFLSALFAGAILSYHVEYNPIVTIVV(+) MAPANKAERKAVLDAGAWMFNVVTSVGIIMVNKALMATHGFSFATTLTGLHFATTTLMTLVMKW LGHIQPSYLPLPELVKFVFFANLSIVGMNVSLMWNSVGFYQIAKLCIIPVLCILEILFDKVRYS RNTKLSIVLVLVGVAVCTVTDVSVNSKGLLAAVIAVWSTALQQHYVHHLQKKYSLGSFNLLGHT APAQAASLLILGPFVDFWLTNRRVDTFNYTTIVTIGLYST(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015;Chu et al., 2017

circRNA

Detail information of Os02g0614500_circ_g.2

Address

Any questions?

Supported by