Detail information of BGIOSGA015063_circ_ig.1


General Information
CircRNA Name BGIOSGA015063_circ_ig.1
ID in PlantcircBase osi_circ_014387
Alias Chr04:22119302_22120058(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 19615489-19616246  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, CIRCexplorer2, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-TA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTGCTCTCGCATCAAATCCTCTCCCAACTCCCAACACACGCCGAGGGGAAGAAAGAGAAAGAAG
AAACGGGAGGAAGGAAGGATGGCCGCCCAACCGTACcaaattctcaatgactatcagtggaaca
tgacgaacaagcgtgcaagactgcaagtggtctaaactaataatcgtttatgtaattaaaaata
caaatctc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAAATTCTCAATGACTATCAGTGGAACATGACGAACAAGCGTGCAAGACTGCAAGTGGTCTAAA
CTAATAATCGTTTATGTAATTAAAAATACAAATCTCATTATCTCAACAGAATTTCATGACAGGG
GTCTAGTTGGTGTCCACACAAGTACACAAGTACGCGGAGAAAACCGCACAACATGCACTGTCGA
ACACAATTTGATCGAAAATCCAGTCTGTATTCTTTCTTGGACGTATTTTCTGCATATCTTCCGC
TGCTAGTTTATCAAGAAGATACTAAATTGTACCAATTGTACCGGCCAAAAAAGATCTGCCTTTT
TCATATAAATCCTAAAAAAGTGGGGCAAGAACCACCAATCACGCTTTGCCCCGATCAAATCTCA
ATACAAAACGCATGCTTTTCAGTGCAAAATCACAAAAGAACTTTCAGGACGAACAGAAGCATCA
GAAAGCTTATGCAAACCGCTCTGCAAGAAAGGGGGGGAAAAGAATACCACTTTCCACTTTCCAT
GATCTTTGCCATTCGTCCCAACCCCCCAAATTAAGCTCCACGTAACCACCGCAACACACGGACC
AAATCTAAATCCCAAGAAACAGCCAAAATTCCAGTCGGAGATCAACCAAAACCCCACCCATCCA
GTCCACTCGTCTGCTCGACTGCTCTCGCATCAAATCCTCTCCCAACTCCCAACACACGCCGAGG
GGAAGAAAGAGAAAGAAGAAACGGGAGGAAGGAAGGATGGCCGCCCAACCGTAC
Conservation Information
Conserved circRNAs osa_circ_023895
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021