Plant Circular RNA Database

Detail information of Zm00001d052888_circ_g.3

			
						 General Information
					
						CircRNA Name
						Zm00001d052888_circ_g.3
					
						ID in PlantcircBase
						zma_circ_008224
					
						Alias
						zma_circ_0001661
					
						Organism
						
							Zea mays						
					
						Position
						
							chr4: 203498923-203502279  JBrowse»						
					
						Reference genome
						
							AGPv4.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						find_circ
					
						Parent gene
						
							Zm00001d052888						
					
						Parent gene annotation
						
							RNA binding (RRM/RBD/RNP motifs) family protein
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Zm00001d052888_circ_g.1 Zm00001d052888_circ_g.2 						
					
						Support reads
						NA
					
						Tissues
						leaf, root
					
						Exon boundary  
						
							Yes-Yes							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Zm00001d052888_T003:3
Zm00001d052888_T006:3
Zm00001d052888_T004:3
Zm00001d052888_T010:3
Zm00001d052888_T020:3
Zm00001d052888_T018:3
Zm00001d052888_T014:3
Zm00001d052888_T012:3
Zm00001d052888_T009:3
Zm00001d052888_T016:3
Zm00001d052888_T024:3
Zm00001d052888_T015:3
Zm00001d052888_T005:3
Zm00001d052888_T025:2
Zm00001d052888_T023:3
Zm00001d052888_T001:3
Zm00001d052888_T017:3

General Information
CircRNA Name	Zm00001d052888_circ_g.3
ID in PlantcircBase	zma_circ_008224
Alias	zma_circ_0001661
Organism	Zea mays
Position	chr4: 203498923-203502279 JBrowse»
Reference genome	AGPv4.38
Type	ue-circRNA
Identification method	find_circ
Parent gene	Zm00001d052888
Parent gene annotation	RNA binding (RRM/RBD/RNP motifs) family protein
Parent gene strand	+
Alternative splicing	Zm00001d052888_circ_g.1 Zm00001d052888_circ_g.2
Support reads	NA
Tissues	leaf, root
Exon boundary	Yes-Yes "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Zm00001d052888_T003:3 Zm00001d052888_T006:3 Zm00001d052888_T004:3 Zm00001d052888_T010:3 Zm00001d052888_T020:3 Zm00001d052888_T018:3 Zm00001d052888_T014:3 Zm00001d052888_T012:3 Zm00001d052888_T009:3 Zm00001d052888_T016:3 Zm00001d052888_T024:3 Zm00001d052888_T015:3 Zm00001d052888_T005:3 Zm00001d052888_T025:2 Zm00001d052888_T023:3 Zm00001d052888_T001:3 Zm00001d052888_T017:3

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							GCCTCCCAGTTATGCAACACCAAAAGATGTTCATGTTGTGGAGAAGCCTTATGTTGCACCCATG
AATTCAAATGCCGCCAGTATTGCTACCAATGCCAAAgattatgttaccatcatgctcaagaatg
gaaaaagtaaggatcatgccagtgaggaactccatgtatttctaggggatgatactgcagtatt
catttcct

									
								

					

						Assembled circRNA sequence  
						
							Yes
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							Transcript length: 1377
Transcript exons: 203498923-203499023,203500111-203500489,203501383-203502
279
GATTATGTTACCATCATGCTCAAGAATGGAAAAAGTAAGGATCATGCCAGTGAGGAACTCCATG
TATTTCTAGGGGATGATACTGCAGTATTCATTTCCTGGTTGTGGGGCCATCTTTCTTCAAATAT
GCACTTATATGTGCAACCACAAGAACGAACTCGGGAGGTTAAGGATGATGAGGCCCCCAAAGAA
GTATCTGGAAGAGAAAAATCATCAGATGTGCTCCCGAGAAGCAAACATCAAACTCATTCTGGGC
ACACAATTGAATCAAGTGAAGCTACTAGTAGGAGACGGAGTAACCGGGAATGGAAAGGGATTGG
TCGGAAGGGTAATGAAAAATTTCCGCTTCGAAATGTACTAACTGATATTCTTCATGGGGAGGAC
AAAAGATCGCAAAAGTCCAATGAAGTACGACCCCCTCCATCAAAACAACAGAACGACAGGAAGC
GTGAAAGGGATGATGAGACACATCAAACAAAGAAGGACTCCTCATCACGCTCCATGCTTGGTGA
TGGTGCTTCCCGTCGTCTTCTACAGTTTGCTGTCCGAGATGCTGTAAAAGCTGTACAGCCAACC
AGTACCTCTGCTGAACCAGCATCCAAGCGCCTGTGCTCTGTGGTCGCCACTACTTCTACAGAGC
ACATGCGTGATAGGAGATCAGAAAGATCTCAGGACTACCTGAACGATAGAAGATCAGAAAGATC
TCAAGACAACTTGAGTGACAGAAGATCAGAAAGAACTAGGCCAATGCTACAGGTACATGGAGCT
GCTTTAGCTCTTAGAGCTGCAGCGGAAGCTGCTGCAGATTCTGCAAAGGTTAGATCTACTGGAA
GTGTTTTCAAGCGATTGGGTCAAGGGAATGTTGTGAAACAGCCATCTCGTTCTCGTGAAGAGAA
GAGAGATTATGAAGATTTTGAGCCAGTTACGATCGCAGATGAACATGATTCTGATCAATATGTT
AATAATGAGGAATCCGAAGAGGAATCTGGAGAGCTAACCATGGCAGATAGGGTAGCTGGAAGTG
GAATGTATGTTGATTCGAGCTCTGAAGATGATATGGACCGAGATGAGGGTATTACAAGATACCA
AACTTCTCTTTCACATGACGATACTTTCTCACCATTTGCAGAGAAGAAAACTGTATCGGCACCA
TGCAGTGTTGAACTAGAGACTAATGCAATAAGACCTTCAAGTGTGAATGACGAGGAACAACCTG
TTCCTTCAACACCAACAGCAAGTAAAGCTGTCGCTATTTCTGTTGATGTAAATATGGTGGAGCC
TCCCAGTTATGCAACACCAAAAGATGTTCATGTTGTGGAGAAGCCTTATGTTGCACCCATGAAT
TCAAATGCCGCCAGTATTGCTACCAATGCCAAA
						
					

						Genomic sequence
						
							GATTATGTTACCATCATGCTCAAGAATGGAAAAAGTAAGGATCATGCCAGTGAGGAACTCCATG
TATTTCTAGGGGATGATACTGCAGTATTCATTTCCTGGTTAGTACTTATTGCACACACTTCCAT
TGTTCTTGTATTCTTTGTTTGTTAACTGCCTGAACCAGTCCCTGATATATTTTACAGGCAAATA
CTCTCCGTATTGTAATTGATAACTCACTAATAAGAATGCTATAAACAATGGTAAAATATTAGCA
AATGGTCACCCCAATTTTATTATAGATATGGCAAGCAACATTGTATGTGCCCTAGTATTTGGTT
CGCTATTCGATGTTCAGACAAATATGTTATATTGAGCAATAATAAAATAAGGCTCTGATGACCT
TTCCTGTATGTGGAAAGGAACTAGCAACTAATTGTGGTGGCACCAAAAAGCAGAGGTTTTGACA
AAGTTGTGTTTGCTAAAGGCTTCGAGTAGATGTTTTATGGTATTGATATATTTGTGATGGAAGA
ATGCGGAGGCTTTGATAAGGTTGTGCTTCCTAAATACTTTGCATTAGGTATGCTATGATATTTA
TATATTTTTGATGAGAAATATATATTTGCGCTGCAAGGGTCTTGTGAACATTGAATACACTTCA
GAGTTAGGCCACACAAATGGCTCCTTATATATATATGTATATGTACATAGCTTGAAAGTTTAGT
TGAATCTAGGTACATGTGCCTTGCAAACACTTAATATTTAGAATTTTAGATCAGTCCTTATAAG
TTATATAAGCATGATTGCTATTGAGATCATTGATAAATCCACTAACGAGAAGTGCATCGATCAT
TAGAACGAATTCCCCACCCATCCACCCAACCAAAAGATATCTTTTTCACACATGTCTTCTGAAT
TCATACAGTGTGTTTATTGAAATCACACTGTGGAGACCGCTATAAGTTTTAAACAGCACATGGA
AATGAGAACATCGGAGCTACTTTTACTTTTCATAAACACTGACAAATGTGTACTCTTATCTTTC
CCTGGCAAGCAGTCCATGGTAATGCATATCTCCTGGATTGATTCAGCATCATATTTCGTATGCA
TCAGCAATGATGGCTAGAAGAGACATATTCTTGGCTGGCTTTCATATCATCTCATCATGTGTTA
AATGAATCTGCTACTAATATCATTTTGCTTTTGTAGGTTGTGGGGCCATCTTTCTTCAAATATG
CACTTATATGTGCAACCACAAGAACGAACTCGGGAGGTTAAGGATGATGAGGCCCCCAAAGAAG
TATCTGGAAGAGAAAAATCATCAGATGTGCTCCCGAGAAGCAAACATCAAACTCATTCTGGGCA
CACAATTGAATCAAGTGAAGCTACTAGTAGGAGACGGAGTAACCGGGAATGGAAAGGGATTGGT
CGGAAGGGTAATGAAAAATTTCCGCTTCGAAATGTACTAACTGATATTCTTCATGGGGAGGACA
AAAGATCGCAAAAGTCCAATGAAGTACGACCCCCTCCATCAAAACAACAGAACGACAGGAAGCG
TGAAAGGGATGATGAGACACATCAAACAAAGGTGTGATGTATTATCTATTACCTAGGTCACAAC
TGCAAACTGCATAACATCTTATGTTGTTCAACAGAGTTCATGGCAAGTTGGCGACATTGTGCTT
ATATATATTTTTCACTTTACCAATATTTCTGTTCTGTTCTTTTATGGCCTGCCTTTGCTTACAT
ATTCTTTATACAATCTGCCTAAGTGTTCGTCTATATTTCTCCAGAACAGACTTACCAAGACTCT
TAGCTCTAAATTAGTTGCAAACATGTGGTGGAAACTATATCATTACCATTTTTCTACAATTAAG
TCCTTACCAATTATTTATTAATTACCATTTTCCAATAATTAAGTCCTACCACTATTTAATTATT
TATTGGCAACTGACAGTCCAAATATTTGTTCATCATGAAAGTGCAATGTGAGTTTCGACAGTTT
ATCTTCAGTAAGTACGCTGGGGTTTCTTCGGTTAGAAACAACCGACAAAGCTTTTGTTGTTCAT
GTTAGTTTGGAATTTTGGAGAACTCTCTGAGTAGGCAGTCCATTTAGTTTATCTTCTAGATTTT
TTGTGAATATTTTGTACCCCTCTTATCTAAATTATAAGTCATTCTAGCTTTTTAGGTACATTAT
TTTTGCTATATGTCTAGATTTATATGCTGTCTAGATACATAATAAAAGTTATGTACGCAGAAAA
GCCAAAACGACTTTAATTTGGAATGGAGGGATTACCAAGTTTGGATATAGAAACTGCTGACCGC
TAAGGGATGTGCATCACATTGATTTTCTCTAAGCCCTTTATTGGCGCACTCACATATTTTCTCC
TCTTATATTCTGTTGCTTTGTACTTCAAAATTTTATTTTAAATGTTTTAGGTACTATGACTTAT
ACAATGAGCTTGTTTTCTTTGTTAACAGAAGGACTCCTCATCACGCTCCATGCTTGGTGATGGT
GCTTCCCGTCGTCTTCTACAGTTTGCTGTCCGAGATGCTGTAAAAGCTGTACAGCCAACCAGTA
CCTCTGCTGAACCAGCATCCAAGCGCCTGTGCTCTGTGGTCGCCACTACTTCTACAGAGCACAT
GCGTGATAGGAGATCAGAAAGATCTCAGGACTACCTGAACGATAGAAGATCAGAAAGATCTCAA
GACAACTTGAGTGACAGAAGATCAGAAAGAACTAGGCCAATGCTACAGGTACATGGAGCTGCTT
TAGCTCTTAGAGCTGCAGCGGAAGCTGCTGCAGATTCTGCAAAGGTTAGATCTACTGGAAGTGT
TTTCAAGCGATTGGGTCAAGGGAATGTTGTGAAACAGCCATCTCGTTCTCGTGAAGAGAAGAGA
GATTATGAAGATTTTGAGCCAGTTACGATCGCAGATGAACATGATTCTGATCAATATGTTAATA
ATGAGGAATCCGAAGAGGAATCTGGAGAGCTAACCATGGCAGATAGGGTAGCTGGAAGTGGAAT
GTATGTTGATTCGAGCTCTGAAGATGATATGGACCGAGATGAGGGTATTACAAGATACCAAACT
TCTCTTTCACATGACGATACTTTCTCACCATTTGCAGAGAAGAAAACTGTATCGGCACCATGCA
GTGTTGAACTAGAGACTAATGCAATAAGACCTTCAAGTGTGAATGACGAGGAACAACCTGTTCC
TTCAACACCAACAGCAAGTAAAGCTGTCGCTATTTCTGTTGATGTAAATATGGTGGAGCCTCCC
AGTTATGCAACACCAAAAGATGTTCATGTTGTGGAGAAGCCTTATGTTGCACCCATGAATTCAA
ATGCCGCCAGTATTGCTACCAATGCCAAA
						
					

			
		

Sequences
Splice junction sequence	GCCTCCCAGTTATGCAACACCAAAAGATGTTCATGTTGTGGAGAAGCCTTATGTTGCACCCATG AATTCAAATGCCGCCAGTATTGCTACCAATGCCAAAgattatgttaccatcatgctcaagaatg gaaaaagtaaggatcatgccagtgaggaactccatgtatttctaggggatgatactgcagtatt catttcct
Assembled circRNA sequence	Yes The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	Transcript length: 1377 Transcript exons: 203498923-203499023,203500111-203500489,203501383-203502 279 GATTATGTTACCATCATGCTCAAGAATGGAAAAAGTAAGGATCATGCCAGTGAGGAACTCCATG TATTTCTAGGGGATGATACTGCAGTATTCATTTCCTGGTTGTGGGGCCATCTTTCTTCAAATAT GCACTTATATGTGCAACCACAAGAACGAACTCGGGAGGTTAAGGATGATGAGGCCCCCAAAGAA GTATCTGGAAGAGAAAAATCATCAGATGTGCTCCCGAGAAGCAAACATCAAACTCATTCTGGGC ACACAATTGAATCAAGTGAAGCTACTAGTAGGAGACGGAGTAACCGGGAATGGAAAGGGATTGG TCGGAAGGGTAATGAAAAATTTCCGCTTCGAAATGTACTAACTGATATTCTTCATGGGGAGGAC AAAAGATCGCAAAAGTCCAATGAAGTACGACCCCCTCCATCAAAACAACAGAACGACAGGAAGC GTGAAAGGGATGATGAGACACATCAAACAAAGAAGGACTCCTCATCACGCTCCATGCTTGGTGA TGGTGCTTCCCGTCGTCTTCTACAGTTTGCTGTCCGAGATGCTGTAAAAGCTGTACAGCCAACC AGTACCTCTGCTGAACCAGCATCCAAGCGCCTGTGCTCTGTGGTCGCCACTACTTCTACAGAGC ACATGCGTGATAGGAGATCAGAAAGATCTCAGGACTACCTGAACGATAGAAGATCAGAAAGATC TCAAGACAACTTGAGTGACAGAAGATCAGAAAGAACTAGGCCAATGCTACAGGTACATGGAGCT GCTTTAGCTCTTAGAGCTGCAGCGGAAGCTGCTGCAGATTCTGCAAAGGTTAGATCTACTGGAA GTGTTTTCAAGCGATTGGGTCAAGGGAATGTTGTGAAACAGCCATCTCGTTCTCGTGAAGAGAA GAGAGATTATGAAGATTTTGAGCCAGTTACGATCGCAGATGAACATGATTCTGATCAATATGTT AATAATGAGGAATCCGAAGAGGAATCTGGAGAGCTAACCATGGCAGATAGGGTAGCTGGAAGTG GAATGTATGTTGATTCGAGCTCTGAAGATGATATGGACCGAGATGAGGGTATTACAAGATACCA AACTTCTCTTTCACATGACGATACTTTCTCACCATTTGCAGAGAAGAAAACTGTATCGGCACCA TGCAGTGTTGAACTAGAGACTAATGCAATAAGACCTTCAAGTGTGAATGACGAGGAACAACCTG TTCCTTCAACACCAACAGCAAGTAAAGCTGTCGCTATTTCTGTTGATGTAAATATGGTGGAGCC TCCCAGTTATGCAACACCAAAAGATGTTCATGTTGTGGAGAAGCCTTATGTTGCACCCATGAAT TCAAATGCCGCCAGTATTGCTACCAATGCCAAA
Genomic sequence	GATTATGTTACCATCATGCTCAAGAATGGAAAAAGTAAGGATCATGCCAGTGAGGAACTCCATG TATTTCTAGGGGATGATACTGCAGTATTCATTTCCTGGTTAGTACTTATTGCACACACTTCCAT TGTTCTTGTATTCTTTGTTTGTTAACTGCCTGAACCAGTCCCTGATATATTTTACAGGCAAATA CTCTCCGTATTGTAATTGATAACTCACTAATAAGAATGCTATAAACAATGGTAAAATATTAGCA AATGGTCACCCCAATTTTATTATAGATATGGCAAGCAACATTGTATGTGCCCTAGTATTTGGTT CGCTATTCGATGTTCAGACAAATATGTTATATTGAGCAATAATAAAATAAGGCTCTGATGACCT TTCCTGTATGTGGAAAGGAACTAGCAACTAATTGTGGTGGCACCAAAAAGCAGAGGTTTTGACA AAGTTGTGTTTGCTAAAGGCTTCGAGTAGATGTTTTATGGTATTGATATATTTGTGATGGAAGA ATGCGGAGGCTTTGATAAGGTTGTGCTTCCTAAATACTTTGCATTAGGTATGCTATGATATTTA TATATTTTTGATGAGAAATATATATTTGCGCTGCAAGGGTCTTGTGAACATTGAATACACTTCA GAGTTAGGCCACACAAATGGCTCCTTATATATATATGTATATGTACATAGCTTGAAAGTTTAGT TGAATCTAGGTACATGTGCCTTGCAAACACTTAATATTTAGAATTTTAGATCAGTCCTTATAAG TTATATAAGCATGATTGCTATTGAGATCATTGATAAATCCACTAACGAGAAGTGCATCGATCAT TAGAACGAATTCCCCACCCATCCACCCAACCAAAAGATATCTTTTTCACACATGTCTTCTGAAT TCATACAGTGTGTTTATTGAAATCACACTGTGGAGACCGCTATAAGTTTTAAACAGCACATGGA AATGAGAACATCGGAGCTACTTTTACTTTTCATAAACACTGACAAATGTGTACTCTTATCTTTC CCTGGCAAGCAGTCCATGGTAATGCATATCTCCTGGATTGATTCAGCATCATATTTCGTATGCA TCAGCAATGATGGCTAGAAGAGACATATTCTTGGCTGGCTTTCATATCATCTCATCATGTGTTA AATGAATCTGCTACTAATATCATTTTGCTTTTGTAGGTTGTGGGGCCATCTTTCTTCAAATATG CACTTATATGTGCAACCACAAGAACGAACTCGGGAGGTTAAGGATGATGAGGCCCCCAAAGAAG TATCTGGAAGAGAAAAATCATCAGATGTGCTCCCGAGAAGCAAACATCAAACTCATTCTGGGCA CACAATTGAATCAAGTGAAGCTACTAGTAGGAGACGGAGTAACCGGGAATGGAAAGGGATTGGT CGGAAGGGTAATGAAAAATTTCCGCTTCGAAATGTACTAACTGATATTCTTCATGGGGAGGACA AAAGATCGCAAAAGTCCAATGAAGTACGACCCCCTCCATCAAAACAACAGAACGACAGGAAGCG TGAAAGGGATGATGAGACACATCAAACAAAGGTGTGATGTATTATCTATTACCTAGGTCACAAC TGCAAACTGCATAACATCTTATGTTGTTCAACAGAGTTCATGGCAAGTTGGCGACATTGTGCTT ATATATATTTTTCACTTTACCAATATTTCTGTTCTGTTCTTTTATGGCCTGCCTTTGCTTACAT ATTCTTTATACAATCTGCCTAAGTGTTCGTCTATATTTCTCCAGAACAGACTTACCAAGACTCT TAGCTCTAAATTAGTTGCAAACATGTGGTGGAAACTATATCATTACCATTTTTCTACAATTAAG TCCTTACCAATTATTTATTAATTACCATTTTCCAATAATTAAGTCCTACCACTATTTAATTATT TATTGGCAACTGACAGTCCAAATATTTGTTCATCATGAAAGTGCAATGTGAGTTTCGACAGTTT ATCTTCAGTAAGTACGCTGGGGTTTCTTCGGTTAGAAACAACCGACAAAGCTTTTGTTGTTCAT GTTAGTTTGGAATTTTGGAGAACTCTCTGAGTAGGCAGTCCATTTAGTTTATCTTCTAGATTTT TTGTGAATATTTTGTACCCCTCTTATCTAAATTATAAGTCATTCTAGCTTTTTAGGTACATTAT TTTTGCTATATGTCTAGATTTATATGCTGTCTAGATACATAATAAAAGTTATGTACGCAGAAAA GCCAAAACGACTTTAATTTGGAATGGAGGGATTACCAAGTTTGGATATAGAAACTGCTGACCGC TAAGGGATGTGCATCACATTGATTTTCTCTAAGCCCTTTATTGGCGCACTCACATATTTTCTCC TCTTATATTCTGTTGCTTTGTACTTCAAAATTTTATTTTAAATGTTTTAGGTACTATGACTTAT ACAATGAGCTTGTTTTCTTTGTTAACAGAAGGACTCCTCATCACGCTCCATGCTTGGTGATGGT GCTTCCCGTCGTCTTCTACAGTTTGCTGTCCGAGATGCTGTAAAAGCTGTACAGCCAACCAGTA CCTCTGCTGAACCAGCATCCAAGCGCCTGTGCTCTGTGGTCGCCACTACTTCTACAGAGCACAT GCGTGATAGGAGATCAGAAAGATCTCAGGACTACCTGAACGATAGAAGATCAGAAAGATCTCAA GACAACTTGAGTGACAGAAGATCAGAAAGAACTAGGCCAATGCTACAGGTACATGGAGCTGCTT TAGCTCTTAGAGCTGCAGCGGAAGCTGCTGCAGATTCTGCAAAGGTTAGATCTACTGGAAGTGT TTTCAAGCGATTGGGTCAAGGGAATGTTGTGAAACAGCCATCTCGTTCTCGTGAAGAGAAGAGA GATTATGAAGATTTTGAGCCAGTTACGATCGCAGATGAACATGATTCTGATCAATATGTTAATA ATGAGGAATCCGAAGAGGAATCTGGAGAGCTAACCATGGCAGATAGGGTAGCTGGAAGTGGAAT GTATGTTGATTCGAGCTCTGAAGATGATATGGACCGAGATGAGGGTATTACAAGATACCAAACT TCTCTTTCACATGACGATACTTTCTCACCATTTGCAGAGAAGAAAACTGTATCGGCACCATGCA GTGTTGAACTAGAGACTAATGCAATAAGACCTTCAAGTGTGAATGACGAGGAACAACCTGTTCC TTCAACACCAACAGCAAGTAAAGCTGTCGCTATTTCTGTTGATGTAAATATGGTGGAGCCTCCC AGTTATGCAACACCAAAAGATGTTCATGTTGTGGAGAAGCCTTATGTTGCACCCATGAATTCAA ATGCCGCCAGTATTGCTACCAATGCCAAA

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.144126985

Conservation Information
Conserved circRNAs	NA
PMCS	0.144126985

			
				
						 Functional Information
					

				
						Coding potential
						Y
					

						Potential coding position
						
							203498939-203502276(+)
203502252-203498992(+)
203498987-203502249(-)
						
					

						Potential amino acid sequence
						
							MLKNGKSKDHASEELHVFLGDDTAVFISWLWGHLSSNMHLYVQPQERTREVKDDEAPKEVSGRE
KSSDVLPRSKHQTHSGHTIESSEATSRRRSNREWKGIGRKGNEKFPLRNVLTDILHGEDKRSQK
SNEVRPPPSKQQNDRKRERDDETHQTKKDSSSRSMLGDGASRRLLQFAVRDAVKAVQPTSTSAE
PASKRLCSVVATTSTEHMRDRRSERSQDYLNDRRSERSQDNLSDRRSERTRPMLQVHGAALALR
AAAEAAADSAKVRSTGSVFKRLGQGNVVKQPSRSREEKRDYEDFEPVTIADEHDSDQYVNNEES
EEESGELTMADRVAGSGMYVDSSSEDDMDRDEGITRYQTSLSHDDTFSPFAEKKTVSAPCSVEL
ETNAIRPSSVNDEEQPVPSTPTASKAVAISVDVNMVEPPSYATPKDVHVVEKPYVAPMNSNAAS
IATNAKDYVTIMLKNGKSKDHASEELHVFLGDDTAVFISWLWGHLSSNMHLYVQPQERTREVKD
DEAPKEVSGREKSSDVLPRSKHQTHSGHTIESSEATSRRRSNREWKGIGRKGNEKFPLRNVLTD
ILHGEDKRSQKSNEVRPPPSKQQNDRKRERDDETHQTKKDSSSRSMLGDGASRRLLQFAVRDAV
KAVQPTSTSAEPASKRLCSVVATTSTEHMRDRRSERSQDYLNDRRSERSQDNLSDRRSERTRPM
LQVHGAALALRAAAEAAADSAKVRSTGSVFKRLGQGNVVKQPSRSREEKRDYEDFEPVTIADEH
DSDQYVNNEESEEESGELTMADRVAGSGMYVDSSSEDDMDRDEGITRYQTSLSHDDTFSPFAEK
KTVSAPCSVELETNAIRPSSVNDEEQPVPSTPTASKAVAISVDVNMVEPPSYATPKDVHVVEKP
YVAPMNSNAASIATNAKDYVTIMLKNGKSKDHASEELHVFLGDDTAVFISWLWGHLSSNMHLYV
QPQERTREVKDDEAPKEVSGREKSSDVLPRSKHQTHSGHTIESSEATSRRRSNREWKGIGRKGN
EKFPLRNVLTDILHGEDKRSQKSNEVRPPPSKQQNDRKRERDDETHQTKKDSSSRSMLGDGASR
RLLQFAVRDAVKAVQPTSTSAEPASKRLCSVVATTSTEHMRDRRSERSQDYLNDRRSERSQDNL
SDRRSERTRPMLQVHGAALALRAAAEAAADSAKVRSTGSVFKRLGQGNVVKQPSRSREEKRDYE
DFEPVTIADEHDSDQYVNNEESEEESGELTMADRVAGSGMYVDSSSEDDMDRDEGITRYQTSLS
HDDTFSPFAEKKTVSAPCSVELETNAIRPSSVNDEEQPVPSTPTASKAVAISVDVNMVEPPSYA
TPKDVHVVEKPYVAPMNSNAASIATNAKDYVTIMLKNGKSKDHASEELHVFLGDDTAVFISWLW
GHLSSNMHLYVQPQERTREVKDDEAPKEVSGREKSSDVLPRSKHQTHSGHTIESSEATSRRRSN
REWKGIGRKGNEKFPLRNVLTDILHGEDKRSQKSNEVRPPPSKQQNDRKRERDDETHQTKKDSS
SRSMLGDGASRRLLQFAVRDAVKAVQPTSTSAEPASKRLCSVVATTSTEHMRDRRSERSQDYLN
DRRSERSQDNLSDRRSERTRPMLQVHGAALALRAAAEAAADSAKVRSTGSVFKRLGQGNVVKQP
SRSREEKRDYEDFEPVTIADEHDSDQYVNNEESEEESGELTMADRVAGSGMYVDSSSEDDMDRD
EGITRYQTSLSHDDTFSPFAEKKTVSAPCSVELETNAIRPSSVNDEEQPVPSTPTASKAVAISV
DVNMVEPPSYATPKDVHVVEKPYVAPMNSNAASIATNAK(+)
MPPVLLPMPKIMLPSCSRMEKVRIMPVRNSMYF*(+)
MEFLTGMILTFSILEHDGNIIFGIGSNTGGI*(-)
						
					

						Sponge-miRNAs
						
							NA						
					

						circRNA-miRNA-mRNA network
						 VISUALIZATION
					

						Potential function description
						NA
					

			
		

Functional Information
Coding potential	Y
Potential coding position	203498939-203502276(+) 203502252-203498992(+) 203498987-203502249(-)
Potential amino acid sequence	MLKNGKSKDHASEELHVFLGDDTAVFISWLWGHLSSNMHLYVQPQERTREVKDDEAPKEVSGRE KSSDVLPRSKHQTHSGHTIESSEATSRRRSNREWKGIGRKGNEKFPLRNVLTDILHGEDKRSQK SNEVRPPPSKQQNDRKRERDDETHQTKKDSSSRSMLGDGASRRLLQFAVRDAVKAVQPTSTSAE PASKRLCSVVATTSTEHMRDRRSERSQDYLNDRRSERSQDNLSDRRSERTRPMLQVHGAALALR AAAEAAADSAKVRSTGSVFKRLGQGNVVKQPSRSREEKRDYEDFEPVTIADEHDSDQYVNNEES EEESGELTMADRVAGSGMYVDSSSEDDMDRDEGITRYQTSLSHDDTFSPFAEKKTVSAPCSVEL ETNAIRPSSVNDEEQPVPSTPTASKAVAISVDVNMVEPPSYATPKDVHVVEKPYVAPMNSNAAS IATNAKDYVTIMLKNGKSKDHASEELHVFLGDDTAVFISWLWGHLSSNMHLYVQPQERTREVKD DEAPKEVSGREKSSDVLPRSKHQTHSGHTIESSEATSRRRSNREWKGIGRKGNEKFPLRNVLTD ILHGEDKRSQKSNEVRPPPSKQQNDRKRERDDETHQTKKDSSSRSMLGDGASRRLLQFAVRDAV KAVQPTSTSAEPASKRLCSVVATTSTEHMRDRRSERSQDYLNDRRSERSQDNLSDRRSERTRPM LQVHGAALALRAAAEAAADSAKVRSTGSVFKRLGQGNVVKQPSRSREEKRDYEDFEPVTIADEH DSDQYVNNEESEEESGELTMADRVAGSGMYVDSSSEDDMDRDEGITRYQTSLSHDDTFSPFAEK KTVSAPCSVELETNAIRPSSVNDEEQPVPSTPTASKAVAISVDVNMVEPPSYATPKDVHVVEKP YVAPMNSNAASIATNAKDYVTIMLKNGKSKDHASEELHVFLGDDTAVFISWLWGHLSSNMHLYV QPQERTREVKDDEAPKEVSGREKSSDVLPRSKHQTHSGHTIESSEATSRRRSNREWKGIGRKGN EKFPLRNVLTDILHGEDKRSQKSNEVRPPPSKQQNDRKRERDDETHQTKKDSSSRSMLGDGASR RLLQFAVRDAVKAVQPTSTSAEPASKRLCSVVATTSTEHMRDRRSERSQDYLNDRRSERSQDNL SDRRSERTRPMLQVHGAALALRAAAEAAADSAKVRSTGSVFKRLGQGNVVKQPSRSREEKRDYE DFEPVTIADEHDSDQYVNNEESEEESGELTMADRVAGSGMYVDSSSEDDMDRDEGITRYQTSLS HDDTFSPFAEKKTVSAPCSVELETNAIRPSSVNDEEQPVPSTPTASKAVAISVDVNMVEPPSYA TPKDVHVVEKPYVAPMNSNAASIATNAKDYVTIMLKNGKSKDHASEELHVFLGDDTAVFISWLW GHLSSNMHLYVQPQERTREVKDDEAPKEVSGREKSSDVLPRSKHQTHSGHTIESSEATSRRRSN REWKGIGRKGNEKFPLRNVLTDILHGEDKRSQKSNEVRPPPSKQQNDRKRERDDETHQTKKDSS SRSMLGDGASRRLLQFAVRDAVKAVQPTSTSAEPASKRLCSVVATTSTEHMRDRRSERSQDYLN DRRSERSQDNLSDRRSERTRPMLQVHGAALALRAAAEAAADSAKVRSTGSVFKRLGQGNVVKQP SRSREEKRDYEDFEPVTIADEHDSDQYVNNEESEEESGELTMADRVAGSGMYVDSSSEDDMDRD EGITRYQTSLSHDDTFSPFAEKKTVSAPCSVELETNAIRPSSVNDEEQPVPSTPTASKAVAISV DVNMVEPPSYATPKDVHVVEKPYVAPMNSNAASIATNAK(+) MPPVLLPMPKIMLPSCSRMEKVRIMPVRNSMYF(+) MEFLTGMILTFSILEHDGNIIFGIGSNTGGI(-)
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Ma et al., 2021b

circRNA

Detail information of Zm00001d052888_circ_g.3

Address

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