Detail information of Os06g0644200_circ_g.17


General Information
CircRNA Name Os06g0644200_circ_g.17
ID in PlantcircBase osa_circ_031698
Alias Os06circ14773
Organism Oryza sativa
Position chr6: 26277142-26278036  JBrowse»
Reference genome IRGSP-1.0.38
Type   ue-circRNA
Identification method SMALT, Segemehl
Parent gene Os06g0644200
Parent gene annotation Similar to Pyrophosphate-energized vacuolar membrane proton pump
(EC 3.6.1.1) (Pyrophosphate-energized inorganic pyrophosphatase
) (H+-PPase) (Vacuolar H+-pyrophosphatase). (Os06t0644200-01);Si
milar to Vacuolar H+-pyrophosphatase. (Os06t0644200-02);Similar
to Vacuolar H+-pyrophosphatase. (Os06t0644200-03)
Parent gene strand +
Alternative splicing Os06g0644200_circ_g.9 Os06g0644200_circ_g.10 Os06g0644200_circ_g.11 Os06g0644200_circ_g.12 Os06g0644200_circ_g.13 Os06g0644200_circ_g.14 Os06g0644200_circ_g.15 Os06g0644200_circ_g.16 Os06g0644200_circ_g.18 Os06g0644200_circ_g.19 Os06g0644200_circ_g.20 Os06g0644200_circ_g.21 Os06g0644200_circ_g.22 Os06g0644200_circ_g.23 Os06g0644200_circ_g.24 Os06g0644200_circ_g.25 Os06g0644200_circ_g.26 Os06g0644200_circ_g.27 Os06g0644200_circ_g.28 Os06g0644200_circ_g.29 Os06g0644200_circ_g.30
Support reads 3
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os06t0644250-00:3
Os06t0644200-01:3
Os06t0644200-03:3
Os06t0644250-00:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TATAGAGTTCATCGAGTTGACACATATAGTTCCCTCCGTTTCCTATTTGTTATTACTGTCTGTC
CATCAGTCGATCATGCTAAGCTTATTAGCATCATACtggttctctgctatgaccatgaagagtg
ttggcagcgcagcgctcaagatggtggaggaagtccgtaggcagttcaactccatccctgggct
catggagg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGGTTCTCTGCTATGACCATGAAGAGTGTTGGCAGCGCAGCGCTCAAGATGGTGGAGGAAGTCC
GTAGGCAGTTCAACTCCATCCCTGGGCTCATGGAGGGCACAACCAAGCCTGACTACGCAACCTG
TGTGAAGATCTCCACTGATGCATCCATCAAGGAGATGATTCCCCCAGGTGCTCTTGTCATGCTC
AGCCCTCTCATTGTTGGGATCTTCTTTGGTGTCGAGACCCTCTCAGGACTACTTGCTGGTGCTC
TCGTTTCTGGTGTTCAGGTTCGCACATTCTTTTTCACAGCCACACTCTCATCACTTACTCTTGC
CATATTGCATTCATAACCATGTTGCTTCCTTTCAGATTGCCATCTCTGCATCAAACACTGGTGG
TGCCTGGGACAACGCAAAGAAGTACATTGAGGTAAGAACTTATCAGCCATCTTCCATCACAGCA
ACACTTGACGTCAAGCAGTTTTTTTCCCCTCCCATATTCGCCAAACATTATAACTCTCGTTCTC
CCTGGTTTTAGGCTGGTGCATCTGAGCATGCAAGGACCCTGGGCCCGAAAGGCTCAGACTGCCA
CAAGGCTGCTGTGATCGGCGACACCATTGGGGATCCTCTCAAGGACACCTCAGGCCCCTCGCTC
AACATCCTCATCAAGCTGATGGCTGTCGAGTCGCTCGTGTTTGCCCCGTTCTTCGCCACCCATG
GAGGCATCCTCTTCAAGTGGTTTTAGATGGTGACGATAGATTTACGAGGACGTTATTTTTGCCA
GGAGGGCGCTGGAAATCATCCATATATTATAGAGTTCATCGAGTTGACACATATAGTTCCCTCC
GTTTCCTATTTGTTATTACTGTCTGTCCATCAGTCGATCATGCTAAGCTTATTAGCATCATAC
Conservation Information
Conserved circRNAs NA
PMCS 0.347312039
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015