Detail information of 5_circ_ag.5


General Information
CircRNA Name 5_circ_ag.5
ID in PlantcircBase ath_circ_043728
Alias NA
Organism Arabidpsis thaliana
Position chr5: 21294950-21299391  JBrowse»
Reference genome TAIR10.38
Type   ag-circRNA
Identification method in-house script
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing AT5G52470_circ_g.1 AT5G52470_circ_g.2 AT5G52470_circ_g.3 AT5G52470_circ_g.4 AT5G52470_circ_g.6
Support reads 6
Tissues leaf
Exon boundary   No-No
Splicing signals   CG-AA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CAGGAGTGTTTGTTGCCAAAAGTAAAGCAGATGCTCTTGTAACCAAGAACTTAGTTCCTGGTGA
AATCATTTACAATGAGAAGAGAATCTTTGTTCAGAAtgaagatggaactaaggttgaatacaga
gtttggaatccgtttagatctaagttagctgctgcaattcttggtggtgtcgacaacatttgga
tcgtaagt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence TGAAGATGGAACTAAGGTTGAATACAGAGTTTGGAATCCGTTTAGATCTAAGTTAGCTGCTGCA
ATTCTTGGTGGTGTCGACAACATTTGGATCGTAAGTCCATCTATACACATACCACATTGACTCT
GTTTTCTTTTTTTGTATTGAAAGACATGTGCTTGAATTGGTTCTTTGTTAAAACTTTTGTAGAA
ACCTGGTGCCAAAGTTCTTTACTTGGGTGCTGCTTCTGGGACCACTGTCTCTCATGTTTCTGAC
CTCGTTGGCCCTGTAAGTCTTTCACTAAATTATTATTTTAGTTATCCGTAGGTCCATTTCTATC
CTATGTTTGAGACTTATCTTTGTTCTATTGCTTTATGATTTGTAGGAGGGATGTGTTTATGCTG
TTGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCCAAGAAGAGAACTAACGTTAT
TCCAATCATTGAAGATGCTAGACATCCGGCTAAGTACAGAATGCTCGTGGGCATGGTTGATGTC
ATATTCTCTGATGTTGCTCAGCCAGATCAGGTTTGGTTCTATATTTCTTACTATGAAAGTTTGA
AGTTACCCTTTCTACAGTTTTATTCACAAAGGTTACGTCATATTGCATTGCATCTTTTGCTTTT
AAAATATCAGTTCATTGAAATCGGCATATGATGACATTTCATTTACTATGAAATGTTTGAAGCC
TTTTTATTTTACAGTTATATCTTCAAAGTTTTTTTTTATTGCATTGCATCTTTTGCTTTTAAAA
AAATCAGTACAATGAAATCGGCAGATGATGATTTTACTTGGATTCCCCTTCAGAACATTTATGG
GTGTTGCAAACTCCAAGCTTCTGATGCTACTTTGTATCTTTTTACTAAAATTTTTTACTTTGAA
CATGCAAATCTGTTTTAATCTCAAAGTTTTTATTTGTCTTCATTTGGTATATCTTATCGATTTG
GAAGAAGTCTTTTCGGTTTCTTCTGGTTTTCAACAATTGCATTTTCAAGTCATTTAGAAGTTTT
ACTTTATTACTAAACTTGGAGACTCAATTGTTGTAGCAATATTGCTGAGCTAGCAGAGATTGCT
CCAAGAAATCTGCAATGATTCCATAAATGTTTCTATGTTTATGTTAATGTCTCTCTTTATTCTC
ATTTTGGTTCTCTGTTTATGTTTTATTTAATTGAATCCATCTATTTGCCTAACTCTTGAAGGCA
AGAATCTTGGCCCTGAATGCCTCATTTTTCCTCAAAACTGGTGGACACTTTGTTATCTCAATCA
AGGTCAGTGCTCTTATCCTTAATCAAATTCAACAATGTTCTCCTCTGTTATTATTCAATTTGTA
TTTCCGTCGCTAAATAAACATGTCTCATCTGTTCAGGCCAACTGTATCGACTCTACAGTTGCAG
CAGAAGCAGTCTTCCAGAGCGAGGTGAAGAAGCTGCAACAAGAGCAGTTTAAGCCAGCAGAACA
GGTGACTCTCGAGCCGTTTGAGCGTGACCATGCCTGTGTTGTTGGTGGTTACCGCATGCCGAAG
AAACAAAAGACCCCAGCCTCATAGAGGAACTGTGGACAGTAGTGCCTGTGTATTAAGACTTATT
TACTGGGTTTTGTTTTTATCTCCTTGCTTGTTGTATTAAGCTAGAGATGGATAATGCTTTTATG
TCTCATTTGGAAAATTTTATCCTCGTTTTAGAACTAATATATATTGATGCAACATTTTCGTCCA
ATGATTGTATCTCCATCAGTCTTTTCTATGCTTGTTTTTGCTTGGCTATAAGAACTACTGTCCA
TTTTAATCCTACTTGTTTCTGCATGCTGAATTGATTGTTGAAGTAGTTTGTTTTGAACATGATT
ATGCTCAAGAAAAGGCGTAAAAGTATCACTTAGCTCTGAAAGGAACTCATTTTTTTTTGGTTAA
TAAAATTTTAAACACAAACAAACCGACTAAGTGTTATTGACATAAGTCTCAATACAGTTTCAAG
TAATATTCGGCTTCTTCCACTATTGGATCAAAGTTATAGGCGCCTTCTTCCATCGGTAGCGCAT
TTTTAAGTATTGCCAATTGGCGTGACCAATGAAAATAGTAAGTTTCAAAAGAAAACGGGTAATC
AGCAGAGGTAGAATCATTGTGGCGTCTCAAATCTTTAATTTTCTCAAAACAACGCTTCTCTAGA
TTCCCGACAAGGTTGATACATTGGCGTAAATCGAGGTGTTCCAGGTGAGGACAACCGTCAAGAA
TGGCGTTTAAGCCTGTTTTGGTTAGTTTGTTCCCACAAAGCTGGAGATGGCGTAGTTTAGGCAT
GCTTTCTGCAATTGCTATGGCATCATGATCATCATCATCCGAACTTAAGTAAAAGAGGCGGTTT
AGCATCAATGTCTTCAGATTTGGACAAGACAGCCCTGCAAGTTTCATAGACTCTCCTGACAATG
ATATTCCTGAAACCTCAAGCTCTTCAAGCATTGGAAGTTTCACAACTGCTTGAACAAATCCATC
GTCTGTTATTTCTGAGCACATTAGTCTAAGGCTTCTAAGATTACTTGACCTACAAGTAATGGTG
TGTAAAAAGTTATAAATCATAATCTTGAGATATCTGTTTTTAACAGACACTTGAAGACTTACAT
GAAAAGTAATCAAAAGTCAAAACTAGAATTAGAGGAGAACCTCTCCGCGATGTATGTAAGGAGA
GAATCACTCCCGAAGTCCCCAATGTTGATCTCCAGCAAGCCACCCTCGCTACGATCAACGGCGT
TACGACATATCGCCTCAGGATTGTTCACCAGTACTGGTTTGTTGTAACTCAAGATTCGCATGTC
GATTTTACGCCATATGGATGGGTCTTTACAAACATATCGTCACGATCTACACACTTTCTGAGCG
TTCTCCAGTATCTCAGTCACGCTAAGACGTAGCAGAATCAAACACATCAAATCCGTCGGAAGAT
CCGCCCAGTTTTTTGGCTCTTCGTTTTTCATCAGTGAAGACAGCGGATCCATTTCTGATGAGGA
TCAAAATGTCAAATCTGTGAAATATATATATCAGAAAGTCATTTAGTTTTAGGCCTTCTTTGAT
TATTTGTAGATTCTAAGTAGTTTTTGGTTTTAGTTTTAGGCCTTGAATGGTAGTAGATTCTAAA
ATGGTTTCTAGTTTGCATAAAAAAGTTTCCTGAAAAGCTAAGAAATCTAAATTTTTAATTTTTT
ATTAATTAATGAAAAGCAAAAAAAAAAAATCTATTTATGCAAACTAGACACCATTTTAGAATTT
ACAATCATTCAAGGCCTTAATTGTTTATTAACTAATGAAAAAAAAATCAATTTTATGAGTTTTT
TGTCCAACTTCGTGTGATTTTTTTTCCTCTTCTTGTTTTGTTTAAACTAATGATTGTTTTGGAC
TTTAAAGTCAGAAGGCATCTCTGATTACTTGATCTGCAATATAAAGTTATAACAATAAGATGCA
AAATTTTACAATCTAGTCCTTATGGCACTAAGTTTACGAAAACAATTCATGTCTAATAAGCCCA
TTACCTGAATTAATTATTGGGCCTTAAGCTCCTAATATTCTGACCTTTTGTATTTCAAAATCAT
GTATTCCTTGCATAACAAGAAATCTGATGGTGGTGATTCGATAAAAAGAGTTCGATAGGATCTG
AAATCTTCCTACAAGAAGTAAACTGTTTAACAGAATTTGTTAAATGTAATAAATAAAAACTTTT
CCATATTTATCGGAAAAATAAATGGAACCTTTCCAGCTTTCCTATACCAACTCCAAATTCCAAT
AGATAAACATTCTTAAACCCTAGCAGGGGCTCGATAAAAACTAAAAAATAAAAAAACCAAACAC
GAAAGCTGCAAACATCGATTAACATCAACCTTCTCTTTGTTGCTTTCGCTCTCGCTCTATAGCA
AAGATGAAACCTCCCCAAAGAGGTTAGAACCCTAGCAGCCGTTTTGTTTTACTACTTGTTTAAT
TTCTCTGTTCGACCTATAGTATAGGGTTGAGGGTTGTTAACTCCAAATTCGTTTTGTCACAATA
TATCTACCTGAATTGCTTGTTACGTAAACTGTTTTGAGTCTTCACTTCTTCAATCCAAGTTTAA
TAGGAGATTTAATAATACTCTCTTCTGATTAGTTAATTTCGGTTTTATCTGTATGATTATGCTC
AGGACGTGGTGGTGGTGTTAGAGGTGGAAGAGGTTTAGCCAGAGGCGGTGAAGGAAGTGCCGTA
AGAGGCAGTGGAAGAGGCGGCGAAAGTGGCCGTGGAAGAGGGCCTGGAAGAGTTAAAAGTGAAT
CGGACGGTGGAATTAAGGGAGGAAGCAAAGTGTTAGTGACACCACACAGGCACGCAGGAGTGTT
TGTTGCCAAAAGTAAAGCAGATGCTCTTGTAACCAAGAACTTAGTTCCTGGTGAAATCATTTAC
AATGAGAAGAGAATCTTTGTTCAGAA
Conservation Information
Conserved circRNAs NA
PMCS 0.415204977
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Dou et al., 2017