Detail information of BGIOSGA013998_circ_g.1


General Information
CircRNA Name BGIOSGA013998_circ_g.1
ID in PlantcircBase osi_circ_005282
Alias 3:40785754|40785903
Organism Oryza sativa ssp. indica
Position chr3: 40785754-40785903  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA013998
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-Yes
Splicing signals   GT-AG
Number of exons covered BGIOSGA013998-TA:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CTAACAGATGCACAGAAACGTGCACAAAACCTGCGGGCATATAAAGCAGACCTTCAAAAGGCAA
AGAAAGAGCAGaagcttagattacaggaatgtttggataaaaagaaggatgcttcggccaggag
attgccatcgtcaaaaacccgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGCTTAGATTACAGGAATGTTTGGATAAAAAGAAGGATGCTTCGGCCAGGAGATTGCCATCGT
CAAAAACCCGGCTAACAGATGCACAGAAACGTGCACAAAACCTGCGGGCATATAAAGCAGACCT
TCAAAAGGCAAAGAAAGAGCAG
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021