Detailed infomation of each circRNA
General Information | |
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CircRNA Name | Zm00001d013984_circ_g.2 |
ID in PlantcircBase | zma_circ_008429 |
Alias | Zm05circ00025, zma_circ_0001697, GRMZM2G048435_C3 |
Organism | Zea mays |
Position | chr5: 27317218-27320042 JBrowse» |
Reference genome | AGPv4.38 |
Type | ue-circRNA |
Identification method | CIRI2, find_circ |
Parent gene | Zm00001d013984 |
Parent gene annotation |
Protein EXECUTER 1 chloroplastic |
Parent gene strand | - |
Alternative splicing | Zm00001d013984_circ_g.1 Zm00001d013984_circ_g.3 |
Support reads | NA |
Tissues | leaf, endosperm, root |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | Zm00001d013984_T024:2 Zm00001d013984_T007:3 Zm00001d013984_T023:3 Zm00001d013984_T012:3 Zm00001d013984_T020:3 Zm00001d013984_T001:3 Zm00001d013984_T013:2 Zm00001d013984_T021:2 Zm00001d013984_T009:3 Zm00001d013984_T008:3 Zm00001d013984_T016:3 Zm00001d013984_T018:3 Zm00001d013984_T011:3 Zm00001d013984_T006:3 Zm00001d013984_T022:3 Zm00001d013984_T015:3 Zm00001d013984_T014:2 Zm00001d013984_T019:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.092151792 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
27318720-27317246(+) 27318478-27317220(+) 27318681-27320037(-) 27317276-27320030(-) |
Potential amino acid sequence |
MHCLQVVSTICLCKVYFKYRETRAVRSQLSVRGSEDIGI*(+) MGTTFKILILGTAVGSLDKSFEPGPASMLLSSLSLSSMFTLPSNSSCLDPTELLDIFILSMPSF SLNMFGTWSESLSSGFRCTACRLYPPFASAKYISNIGRPELSEVSCR*(+) MLREKLGMDSINISSSSVGSKHEEFDGSVNMDDKDSDDSNIDAGPGSKDLSSDPTAVPRIKILK VVPMQNVDKDYIINIFDQISEENDDPEVENESSEDAGDEDNSGVAETVSAEENGDESGDESDIE PLVSIDFVIENNDDYASHPSAEAFERMPARLEKRDRFSFSFYTEEYSKKLDAGKAQQTSKKTVR LHTDQQDYDGFVELDRVKLSGSNKKLSILQLGIKRNNKVQKKLHGVTHFSRIQMPISSDPLTDS *(-) MELPTLVVFRCLYLQILLPTADF*(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | responsive to drought stress |
Other Information | |
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References | Han et al., 2020; Ma et al., 2021b;Zhang et al., 2019 |