Detail information of Zm00001d013984_circ_g.2


General Information
CircRNA Name Zm00001d013984_circ_g.2
ID in PlantcircBase zma_circ_008429
Alias Zm05circ00025, zma_circ_0001697, GRMZM2G048435_C3
Organism Zea mays
Position chr5: 27317218-27320042  JBrowse»
Reference genome AGPv4.38
Type   ue-circRNA
Identification method CIRI2, find_circ
Parent gene Zm00001d013984
Parent gene annotation Protein EXECUTER 1 chloroplastic
Parent gene strand -
Alternative splicing Zm00001d013984_circ_g.1 Zm00001d013984_circ_g.3
Support reads NA
Tissues leaf, endosperm, root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Zm00001d013984_T024:2
Zm00001d013984_T007:3
Zm00001d013984_T023:3
Zm00001d013984_T012:3
Zm00001d013984_T020:3
Zm00001d013984_T001:3
Zm00001d013984_T013:2
Zm00001d013984_T021:2
Zm00001d013984_T009:3
Zm00001d013984_T008:3
Zm00001d013984_T016:3
Zm00001d013984_T018:3
Zm00001d013984_T011:3
Zm00001d013984_T006:3
Zm00001d013984_T022:3
Zm00001d013984_T015:3
Zm00001d013984_T014:2
Zm00001d013984_T019:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTAAGTGTAAAGCATTGTACCTGCAGGTTGTATCCACCATTTGCCTCTGCAAAGTATATTTCA
AATATAGGGAGACCAGAGCTGTCAGAAGTCAGCTGTcggtaagaggatctgaagatataggcat
ctgaatacgactaaagtgggtaactccatgcagttttttctgaaccttgttatttcgtttgatg
ccaagttg
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 890
Transcript exons: 27317218-27317323,27318023-27318727,27319964-27320042
CGGTAAGAGGATCTGAAGATATAGGCATCTGAATACGACTAAAGTGGGTAACTCCATGCAGTTT
TTTCTGAACCTTGTTATTTCGTTTGATGCCAAGTTGTAGTATCGAAAGTTTTTTGTTGCTGCCG
CTCAACTTTACACGATCAAGCTCAACAAAACCATCATAATCCTGCTGATCGGTATGCAAACGAA
CTGTTTTCTTTGAAGTCTGCTGGGCCTTTCCAGCATCTAGTTTTTTACTATATTCTTCAGTATA
GAAGGAAAACGAGAAGCGGTCTCTTTTTTCTAATCTAGCTGGCATTCGTTCAAAAGCTTCAGCA
GATGGATGAGAAGCATAGTCATCGTTATTCTCAATGACAAAATCAATTGAAACCAAGGGTTCAA
TATCACTTTCGTCACCAGATTCATCACCGTTCTCTTCTGCAGAAACTGTTTCTGCTACTCCACT
GTTATCTTCATCACCAGCATCTTCTGAAGATTCATTTTCAACTTCAGGATCATCATTTTCCTCT
GAAATCTGATCAAAAATATTGATTATGTAGTCTTTGTCAACATTCTGCATGGGTACCACTTTCA
AGATTTTAATCCTGGGAACTGCAGTTGGATCGCTTGACAAGTCTTTCGAACCAGGGCCAGCATC
AATGTTGCTATCATCACTATCTTTATCATCCATGTTTACACTTCCATCGAATTCTTCATGCTTA
GACCCTACTGAACTGCTAGATATATTTATACTGTCCATGCCAAGTTTCTCCCTTAACATGTTTG
GCACTTGGTCAGAATCACTATCATCTGGTTTCAGATGCACTGCCTGCAGGTTGTATCCACCATT
TGCCTCTGCAAAGTATATTTCAAATATAGGGAGACCAGAGCTGTCAGAAGTCAGCTGT

Genomic sequence CGGTAAGAGGATCTGAAGATATAGGCATCTGAATACGACTAAAGTGGGTAACTCCATGCAGTTT
TTTCTGAACCTTGTTATTTCGTTTGATGCCAAGTTGTAGTATCTGCATTAGATACGTTGAAATG
ATATCAAGAAGCTGTTTAAAAGTATTTCATATTGTAAGTCGACAGCACCATAAAGAAATTCATC
CTCAAGCACATATATACTCGAATTCATTTTTAAATTTGTGTCAATATGCATGTTGGAATCTGAC
AATCAATGGCAAACTAGATAATCAAAGGTAAATGAAGGATCATGGGACAACATTATCATAATAA
TCTAAGGTGTTTGATACAGATGTAAGAAGCAGGTATTGTACACATTCTGTGAAGAAATGGTTGA
CAGGTCCTTGCTGTTTTTTTTTTCTCGAACATGCAGGAGAGCTGCATATCTATTTCATTAGCAG
AAGGAAGAAAAACAAAACACAGTATATACAGGGACCTAACAAAACACTCACGCACACACATACA
ACAAGAGGTCTCCTGCGTGTTTATCACAAGGTCAAAGTGGTCCGGTTTATAAAATGAATGCAGC
TCAGAAGATCCACTGGGGTTCAAGCATAAAACAGGTTATGTTTGACGTTTTACTTTACCAGTTC
ATATAGAAACTGAATAGATTAAACCAGAAGTGATCATTAATAAAAAACAGTTGGTCCCCATAGT
CAAACAAGACACAAATCAATGCTCATTTGGACAATTCAATGAAGCGCAATGAATGGTGCCAAAA
CTTAATGCAGCACATTATATACAAATAAAGTATTTACCGAAAGTTTTTTGTTGCTGCCGCTCAA
CTTTACACGATCAAGCTCAACAAAACCATCATAATCCTGCTGATCGGTATGCAAACGAACTGTT
TTCTTTGAAGTCTGCTGGGCCTTTCCAGCATCTAGTTTTTTACTATATTCTTCAGTATAGAAGG
AAAACGAGAAGCGGTCTCTTTTTTCTAATCTAGCTGGCATTCGTTCAAAAGCTTCAGCAGATGG
ATGAGAAGCATAGTCATCGTTATTCTCAATGACAAAATCAATTGAAACCAAGGGTTCAATATCA
CTTTCGTCACCAGATTCATCACCGTTCTCTTCTGCAGAAACTGTTTCTGCTACTCCACTGTTAT
CTTCATCACCAGCATCTTCTGAAGATTCATTTTCAACTTCAGGATCATCATTTTCCTCTGAAAT
CTGATCAAAAATATTGATTATGTAGTCTTTGTCAACATTCTGCATGGGTACCACTTTCAAGATT
TTAATCCTGGGAACTGCAGTTGGATCGCTTGACAAGTCTTTCGAACCAGGGCCAGCATCAATGT
TGCTATCATCACTATCTTTATCATCCATGTTTACACTTCCATCGAATTCTTCATGCTTAGACCC
TACTGAACTGCTAGATATATTTATACTGTCCATGCCAAGTTTCTCCCTTAACATGTTTGGCACT
TGGTCAGAATCACTATCATCTGGTTTCAGATGCACTGCCTGAAAACATCCCAATTTTTAAAATG
GACAAAACTATAAGACATTACTAACAAGATAAGAGTTCATTTTTAATATAGTAACTGTTATTTG
ACCTTACTCATAGCTACTGAAATCTTGCAGTTAACAATATCAGCACTTGAAATCGGAAGCTGCT
CAAAACTGATACAGGAAATTTATTCTCATGGTGCATGCCAAATACATTTTCCCAATATAATGCA
AAGTTGCAAACGCTCAAGTTCAATGTGTGTGGATTTATGTACAGGGATATGAAACGTGAAGTGA
AACAAGGCTTTTTTATGTTCATACTCAAGTCTGACAAACATGTGCAAGTACGGGCCAGCAACAT
ATGGTCCAGCCAGAGAGTTAGGTGTTGTTTGGTTCACGAAATGTAACGTAAATGGTAACGGTAA
TAATTCACACCTGATTACCAGCGGTAACATGGTTTTTAAAGCGGTAAGGCGGTCCAAGGCGTTG
GAGCACCGCCTAGGCGAGGTAGGCGGGCAAGGCGCCTAGGCTTTAGACCACCGCCCGGACGCCT
AGGCGACACCTTAAGAACAGAGGCGGTAACAAGTTTGAATAAGATGGTATTAATTTCTAGTGGT
ATCTGATTACAGTTGGACTTAAACAAACATGGTTTAACGTTATCGATTACCGTTCACGTTACAA
ATAGGTGAACCAAACAGCACCTTAATGGTTTTTTAAATAAAAAATGAGTATGCAAGGCTGTCCA
ATATGGCGCTTGGCATTATCATATTCTATACTAATAATAATGTCAAAAATCTGAACCATGGGAA
TGGGAAGAATACGCTTGTCATTATCATATCATATACTGTTAATGTCAAAAATCTCAACCATGGG
AGAAGACATGTCCCTAGCTTTTCTTCCAAACCCTGTTTGACCATGAAACACAATGAAACCAGTT
CTCACTTCTCAGAAAGGTACCCACATCCACATGACATGTGAGCCAGGTACAAAGCCAGGAGGAT
GTCTACACAAATGGAGGCTCCATCAACTGAATTATCACTCAGTCCTCAACAGCGAAAAGAAATA
AAGGATGACATCCAGAATTTCTAGAGCACATGTCAAAACTCAGTATTCTGTTTACGAACCTAGT
AAGTGGTAAGATTACATGAAATAGAAGATGATTTTTATGTTTCCCAACCCAAAATTTCATTGCC
AAAATTATTTTAATACTTGCACATTGATTTTACTTTTATTAAGTGTAAAGCATTGTACCTGCAG
GTTGTATCCACCATTTGCCTCTGCAAAGTATATTTCAAATATAGGGAGACCAGAGCTGTCAGAA
GTCAGCTGT
Conservation Information
Conserved circRNAs NA
PMCS 0.092151792
Functional Information
Coding potential Y
Potential coding position 27318720-27317246(+)
27318478-27317220(+)
27318681-27320037(-)
27317276-27320030(-)
Potential amino acid sequence MHCLQVVSTICLCKVYFKYRETRAVRSQLSVRGSEDIGI*(+)
MGTTFKILILGTAVGSLDKSFEPGPASMLLSSLSLSSMFTLPSNSSCLDPTELLDIFILSMPSF
SLNMFGTWSESLSSGFRCTACRLYPPFASAKYISNIGRPELSEVSCR*(+)
MLREKLGMDSINISSSSVGSKHEEFDGSVNMDDKDSDDSNIDAGPGSKDLSSDPTAVPRIKILK
VVPMQNVDKDYIINIFDQISEENDDPEVENESSEDAGDEDNSGVAETVSAEENGDESGDESDIE
PLVSIDFVIENNDDYASHPSAEAFERMPARLEKRDRFSFSFYTEEYSKKLDAGKAQQTSKKTVR
LHTDQQDYDGFVELDRVKLSGSNKKLSILQLGIKRNNKVQKKLHGVTHFSRIQMPISSDPLTDS
*(-)
MELPTLVVFRCLYLQILLPTADF*(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to drought stress