Detail information of Csa2G120970_circ_g.1


General Information
CircRNA Name Csa2G120970_circ_g.1
ID in PlantcircBase csa_circ_000945
Alias Chr2:8095356_8098453
Organism Cucumis sativus
Position chrChr2: 8095356-8098453  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2
Parent gene Csa2G120970
Parent gene annotation NA
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa2G120970.1:8
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GTCTCCGTTGCCGTTCCATACTCATCGGTTCCGCATATGTAAATAGCGTTATAACCTCTAAGCC
GACAGTATCGAGCAAAAACATCAGCACTCAACACACctaaaggtttggcaatgaagctcaaaac
tcgatgaatgaagttgcccaaattgttcagcaactcaccattgagttttgcttgtaaatcagcc
catgtaaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTAAAGGTTTGGCAATGAAGCTCAAAACTCGATGAATGAAGTTGCCCAAATTGTTCAGCAACTC
ACCATTGAGTTTTGCTTGTAAATCAGCCCATGTAAATAATGTATCTGACACCTAATTTTACAAA
ATTTTAAATTTAAAAAGTGTGTAAGCTATGAACAGAGTGGAGAACAGAATCGATCAAGCAAAAA
TTTTACCTCAGGCCTATTTGCTAGTAAGTAGTATCTCCACACTTCTACAGGAATATTTGTATCT
TTTGCATCATTACCAAAAACTCCTATGCCCTTGCTTTTAGAAAATTTTCCTGTACAGAATAAAT
GGTTACAGTAAGATGTTTCCAAACGCCATATACAAGTAATCCATCCTTACAGATGAATTATAGA
TAAAAAGATGTGAACTGACTGAATCATTCACTGTTACCTGCTTCATAGTTTAAATATTCAGTAA
CACTAATGGTTTTCATTAAGGTCCAGTCTTCTCCAGTTCCAAGAAGAGTGGAAGGAAACATAAC
CTGAATCAGTATTCTAGAGAAGTTAACGAATACATATAAGTTCCAATTTAAGGGTGAGAGAGAG
ATTTATTACAATGGTCAAAGTGGCATTTGTTAATTCATTTAAGAGGAGGAGAAAAAACAGATCT
TCAGTCAAAAAGGGAAGTTGAATAGTGAGGCCTACCGTGTGAAAAGGCACGTTATCCTTTCCCA
TAAATTGAAAAAGCTCTACATTTTCTGGATTCTTCCACCACTTCTCCCATTCATTTGTGTAGCA
TGATGTAATGGAGACATATCCTATAGGTGCATCAAACCAGACATAGAAAACCTAACAAATTGAA
ATCAAAATTAATAATTTTATATCATAGAAAATTGTCTGGCTATTATAATGAAAAAGATTGAAAA
TAATACTAACCTTGTCCTTGAACCTTTCAAGTGGAACGGGAACCCCCCACTTAAGATCTCTTGT
AATACACCGAGGTTTCAACCCTTCCTTAAGCCAAGCATTTGTTGCTTGAATAGCATTTTGGCTC
CAAGATCCAGCCACAGACATCTTGTTGATATATTCTTCCAGTTTCTCTCTCAGCAAAGGAAGTT
CAAGAAACATGTGGTTTGTGTCACGGATACGTGGGGTTGTTTGACAGACCTATTTTCAAATATT
AACACTAAGTTGACATCTTGGGGAAAACGAAAACTGATAACTTTTTGTTTTTTAATAAGAAACC
CGGAAAAAATGTATCTAAACAAATTAAGTGCATGAAATACTGTTACATTTGTTATTTAATTATC
GCTACCCATACAACGCTTGTATCTAAAGCTTTCATTTGGGAACTGTGGAATGAATGAAATGATA
TGACCGTTCTATCAAGATCCTTAGAAGGAGTGCTTGATTCCAATTGTTCTACCCTTTAGCAACC
ATAGTCTAAATCCACTTTGAGAAGTTCTTTGTAATATCTTCGAATGGCTCGACTCCAATTTATA
TAATTTCATTTCAATAATGAAATTTAACTGCCTATCCTATCCAATAAAAATATAAGTTTGTTTT
CCATCTATACGAACGTGGCTTCATAAGTTCTTTTGTCCATATTTGTTGGTTTCTCTTTTTTTTT
TTTTTTTTGGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTTTAAGAGGAAGGTGCTAACA
ACTATTGTTATACATTTTTAAAAAGCAACCAAGCAACCATTCAAATCAATTTTGTTCAAAGAAA
CAATCTCTAACTTTTATCGAGAGTTAAAAGGCAATTGGTGTTGTTTGATTCAAAAGGAAAAGAA
GAGTCTTTCAGGGTGAGATTTAGAAGAAACTGGAGTGGCTGCCCCAAAGACACACACACACGCA
TTAAAAAGGAGGGAAACCCCATTTGAAATATGTTTTCATAATTTCCTAGGAAGTTCTATACAGT
TCGTTGCACTTAATGAAAGATTTTGTAACCCAAAAATATAAGAAGTTTCCCAGTTGCAGCAAAT
CCATGAAGTACCTTGCACCTAGGGTCTTGCAATTCAGTTGGATTTAGAAGTTTCCCACACTTCT
CACACTGATCACCACGTGCAGAGTCATACTCGCAACCTGGAGTAGGACATATGCCTTCAACAAG
CCGATCAGCTAAAAATCTCTCACACGTATCACAGTATAGCTGAAGAATGGGTAAAAAAAAGCTA
AATAAATATCATGTATGAAATCAGTAAACAGACTTAAAAGAACTCAAACACCATGCAACCATAA
CTAACCAGGAGATGAAAATAATACTCAAGTGATAAATAACTCTGTACCTGTTGCATTGTGTTCT
CAGAAAGCCAATTGTTCTCCAATAGTTTGCCAAATATTGCTTGACAAACTTCCGTCTGCTGTGG
CGATGATGTGCGCCCAAACTCATCGAAACTAATACCAAACCAATTATAAACTTCTTTGTGAATT
GCGTGATACCTGACAGTGCAAAAATCGTTAAATAAAGGTAAAAAAATTTCCCCAGATACAAGTC
ACGTCTAAGCAGGTAGCGGGAACTGAGATTCAAAAGAGGACGAAAGAGATTGCAATTGCAGGGC
GCAAAAATATAAATTCAATCTGAACAGCCAATTAAATGTATATAACATTCGGCCAAATTATGCC
ATTACGGAAGTAAGGAAGAGATTATCTTAAAAAATGCTCCACGAAACTGCATGCATGCGAAAAT
TAGAACCGTTCAACAATTTGAATATGAAAAAAAAATGTCCAAGAAGTGAATATGACAGTATCCG
AGTCCAGAAGACAGTACTAGAACCATGAGAACTAGATAATCATCTGATTTACCAAAGTATGGTC
GTGGAAGATAGAAGAAGAGAATTTGAAATTGTAACATTACGTGTGTAGAGATTATATACAAAAC
GAGCTATAGAAACCTGAACGAAGTATTTTCCAGAATCACCGATAGAGAACAGAATCCGGAGAAG
AAATCTTACTTGTCACAAATCTCTTTAGGAGAGCATTTCTCTTCCATTGCTTTTGTCTCCGTTG
CCGTTCCATACTCATCGGTTCCGCATATGTAAATAGCGTTATAACCTCTAAGCCGACAGTATCG
AGCAAAAACATCAGCACTCAACACAC
Conservation Information
Conserved circRNAs NA
PMCS 0.145024354
Functional Information
Coding potential Y
Potential coding position 8098348-8095358(-)
Potential amino acid sequence MEEKCSPKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQ
LYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELQDPRCKVCQTTPRIRDTN
HMFLELPLLREKLEEYINKMSVAGSWSQNAIQATNAWLKEGLKPRCITRDLKWGVPVPLERFKD
KVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWT
LMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQA
KLNGELLNNLGNFIHRVLSFIAKPLGVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEE
KCSPKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQLYC
DTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELQDPRCKVCQTTPRIRDTNHMF
LELPLLREKLEEYINKMSVAGSWSQNAIQATNAWLKEGLKPRCITRDLKWGVPVPLERFKDKVF
YVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMK
TISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLN
GELLNNLGNFIHRVLSFIAKPLGVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCS
PKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQLYCDTC
ERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELQDPRCKVCQTTPRIRDTNHMFLEL
PLLREKLEEYINKMSVAGSWSQNAIQATNAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVW
FDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTIS
VTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLNGEL
LNNLGNFIHRVLSFIAKPLGVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKE
ICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQLYCDTCERF
LADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELQDPRCKVCQTTPRIRDTNHMFLELPLL
REKLEEYINKMSVAGSWSQNAIQATNAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDA
PIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTE
YLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNN
LGNFIHRVLSFIAKPL
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References Zhu et al., 2019