Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Csa2G120970_circ_g.1 |
| ID in PlantcircBase | csa_circ_000945 |
| Alias | Chr2:8095356_8098453 |
| Organism | Cucumis sativus |
| Position | chrChr2: 8095356-8098453 JBrowse» |
| Reference genome | Cucumis sativus v1.5 |
| Type | e-circRNA |
| Identification method | CIRI2 |
| Parent gene | Csa2G120970 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | NA |
| Support reads | NA |
| Tissues | leaf,root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Csa2G120970.1:8 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.145024354 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
8098348-8095358(-) |
| Potential amino acid sequence |
MEEKCSPKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQ LYCDTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELQDPRCKVCQTTPRIRDTN HMFLELPLLREKLEEYINKMSVAGSWSQNAIQATNAWLKEGLKPRCITRDLKWGVPVPLERFKD KVFYVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWT LMKTISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQA KLNGELLNNLGNFIHRVLSFIAKPLGVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEE KCSPKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQLYC DTCERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELQDPRCKVCQTTPRIRDTNHMF LELPLLREKLEEYINKMSVAGSWSQNAIQATNAWLKEGLKPRCITRDLKWGVPVPLERFKDKVF YVWFDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMK TISVTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLN GELLNNLGNFIHRVLSFIAKPLGVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCS PKEICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQLYCDTC ERFLADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELQDPRCKVCQTTPRIRDTNHMFLEL PLLREKLEEYINKMSVAGSWSQNAIQATNAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVW FDAPIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTIS VTEYLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLNGEL LNNLGNFIHRVLSFIAKPLGVLSADVFARYCRLRGYNAIYICGTDEYGTATETKAMEEKCSPKE ICDKYHAIHKEVYNWFGISFDEFGRTSSPQQTEVCQAIFGKLLENNWLSENTMQQLYCDTCERF LADRLVEGICPTPGCEYDSARGDQCEKCGKLLNPTELQDPRCKVCQTTPRIRDTNHMFLELPLL REKLEEYINKMSVAGSWSQNAIQATNAWLKEGLKPRCITRDLKWGVPVPLERFKDKVFYVWFDA PIGYVSITSCYTNEWEKWWKNPENVELFQFMGKDNVPFHTVMFPSTLLGTGEDWTLMKTISVTE YLNYEAGKFSKSKGIGVFGNDAKDTNIPVEVWRYYLLANRPEVSDTLFTWADLQAKLNGELLNN LGNFIHRVLSFIAKPL |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to salt stress in root |
| Other Information | |
|---|---|
| References | Zhu et al., 2019 |