Plant Circular RNA Database

Detail information of Os02g0274000_circ_g.1

			
						 General Information
					
						CircRNA Name
						Os02g0274000_circ_g.1
					
						ID in PlantcircBase
						osa_circ_014229
					
						Alias
						Os02circ10422
					
						Organism
						
							Oryza sativa						
					
						Position
						
							chr2: 9994044-9997769  JBrowse»						
					
						Reference genome
						
							IRGSP-1.0.38						
					
						Type  
						
							ue-circRNA							
									
						Identification method
						SMALT, Segemehl
					
						Parent gene
						
							Os02g0274000						
					
						Parent gene annotation
						
							Similar to Rf2 protein. (Os02t0274000-01);Similar to Rf2 protein
. (Os02t0274000-02);Mitochondrial glycine-rich protein, Fertilit
y restoration in LD-CMS (Os02t0274000-03)
							
						Parent gene strand
						+
					
						Alternative splicing
						
							Os02g0274000_circ_g.2 						
					
						Support reads
						2
					
						Tissues
						panicle
					
						Exon boundary  
						
							No-No							"Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.

						Splicing signals  
						
							GT-AG							The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.

						Number of exons covered
						Os02t0274000-01:4
Os02t0274000-03:5
Os02t0274000-02:2

General Information
CircRNA Name	Os02g0274000_circ_g.1
ID in PlantcircBase	osa_circ_014229
Alias	Os02circ10422
Organism	Oryza sativa
Position	chr2: 9994044-9997769 JBrowse»
Reference genome	IRGSP-1.0.38
Type	ue-circRNA
Identification method	SMALT, Segemehl
Parent gene	Os02g0274000
Parent gene annotation	Similar to Rf2 protein. (Os02t0274000-01);Similar to Rf2 protein . (Os02t0274000-02);Mitochondrial glycine-rich protein, Fertilit y restoration in LD-CMS (Os02t0274000-03)
Parent gene strand	+
Alternative splicing	Os02g0274000_circ_g.2
Support reads	2
Tissues	panicle
Exon boundary	No-No "Exon boundary" shows whether the splicing sites are on the boundary of exons or not. For example, "Yes-No" represents the donor splicing site is on the exon boundary and the accepter is not on the exon boundary.
Splicing signals	GT-AG The splicing signals of the circRNA. For example, "AG-GT" represents that the donor and the accepter splicing signal is "AG" and "GT", respectively.
Number of exons covered	Os02t0274000-01:4 Os02t0274000-03:5 Os02t0274000-02:2

			
						 Experimental Information
					
						Sanger sequencing for BSS  
						
							NA							Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".

						PCR primers for BSS   
						
							NA							PCR primers used in back-splicing site (BSS) validation.

						Sanger sequencing for FL   
						
							NA							Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.

						PCR primers for FL   
						
							NA							 PCR primers used in full-length (FL) sequence validation.

Experimental Information
Sanger sequencing for BSS	NA Sanger sequencing for back-splicing site (BSS) validation. "Yes" represents Sanger sequencing has been performed to valid the back-splicing site, "No" represents the opposite, "NA" represents "not available".
PCR primers for BSS	NA PCR primers used in back-splicing site (BSS) validation.
Sanger sequencing for FL	NA Sanger sequencing for full-length (FL) sequence validation of circRNAs. "Yes" represents Sanger sequencing has been performed to valid the full-length of circRNA, "No" represents the opposite.
PCR primers for FL	NA PCR primers used in full-length (FL) sequence validation.

			
				
						 Sequences
					

				
						Splice junction sequence  
						
							TTATTCTATAGGTGGCAGGAACGCAATCGCTTAATTTCACTTTCTGTCCTGTGACTTTCAGGAA
AAACTCAGGGGCCAAAATTGGATGATGGGAGCGGTGgctttcctcctctctcccatcgccttcc
tcctctcctccctttcctcccaggcggcggcggcgccctcagcagcaggatccaccctcgcgcc
accccagg

									
								

					

						Assembled circRNA sequence  
						
							NA
The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).

					

						Full-length trsnacripts
						
							NA						
					

						Genomic sequence
						
							GCTTTCCTCCTCTCTCCCATCGCCTTCCTCCTCTCCTCCCTTTCCTCCCAGGCGGCGGCGGCGC
CCTCAGCAGCAGGATCCACCCTCGCGCCACCCCAGGCCGGCCGATCCGATCCCCAACGCGATCT
TGTGGGGGGCGAGGCGCGGAAAGGTGGCCGCCGAATCGTCGCGTGGTTGGTTGGTTCCTAGGTG
AGTGAGGGGGTCAAGGGTTATTAGAGATTTCATGATTTCATCCCGTGGGCATGTCATCCTGCCT
GTTGGAGAGTTTGATAAAGACGTGGTTTCGATACTTAGTTGGGGGGGGGGGGAATAATTTGTGA
TTTTAGTTTGGAGAATAGGGTTTAATCTGCCGCAGCGGTTCTTTGTTTTTGGGAGGTAACCTGT
ACAAAGATCATGCTAATCCCCTTCATGATCATTTTTTTTTGGTTATTGGGAAATTTTCCTGAAC
CGTGCTCCCTGTAGAACCCTGCAAAAACAGGATCGTGTTGACGGCAGTGGTTAGCATTGTTAAA
AATTGGGGATCATGGTTACTGTTATAGATTTTTTTTTGTTTTTTACTTATGGGGGTAACACTAT
CTGTTGGATAAAATCCATCATCTTGATGATTGTTAGCTGCCCAATTGTTTAAAACTAATGGGTG
TCGGGACGATTGAGGTGTTGAGCATATGGGGTGGGATCTCGACTACACTTTTAAAAGCACTATG
GTGATATCGGAGTTGTATGACAAGTATCATACTTTTCAAACCTGTGTTGTGACTTAATCCCTCC
GTTCCATATTATAAGACTTTCCAGCATTACCCACGTTCATATAGATGTTAATGATGTGTCTAGA
TTCATTAACATCTATATGAATGTGGGTAATGCTAGAAAGTCTTATAATATGAAACGGAGGAAGT
ATTATTTTTATATGCATGATAACATTATCCCTGAGCATACTGTGTTGTTTCTCAAGCAGTCAAA
TCAGGTTTGAGATGCCATGTATTTATGCACTCTGTAGTAAATAGTTATTTCATTTTGCAATCAT
TTGGCATGGCATTTCATTTCTTTTCATATGTGACAATGTTATGTTGCTTGATTGTAGATCTTAA
AAGTGTCCTCCATGTCAACACTTGTCACGTGCTCACTGCCAGGGGCTGTAACCACTCATGCATC
AACCAGGAGATTTGGAGGTAAATAATTGGCTTTAACATTTATATTTGTTTGCTTTATAGAGTAA
TTCATGAATTGCTGTCCTCAACATTGTTTCATGATTTCACAATGTTTGTCTCTCCCTTACTCGT
TGTTAAGTGTCTTTGGCCCTCTTCTCTTTGCATCGTGACAGTTAAAAAAATTCCACGGATTGAG
AATATGTAATACCTCATTACTTCTTAAATTCATCTGTGTTTGTTGACTTGCTCTCAATTTTGAT
GTCCTAATAGTGCACTAAGAAAATGTAGGTATGTAAGCATCCATTTGGACTATGCAATATAGTA
TACAAATATGACAAGTAGCCCGAAACCTGTCTGCCTGATCCTTTTGCTCCTTTTTTTTAGAGCA
CCCTTGAGTTTATGTTAAGAGGGTTCTTTAGGGAAATTGGTAAACTGTTTCATTTTCCAAATCA
TAAGTTCACATAACACGTGGTTTGGGAATTATGGGTCGAAATCACATCATTAGGGCCTGTTTGG
CACAGCTCTAGCTCCAGCTCCACCCCTCCTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCA
CTAATACTGGGAGTGGAGTTGGGTGGAGCTCTCTCACAAAATGTACTAGAGTTGTGGAGCTGGG
TTTAGGCAGCTCCACAACTCCACTCTAGACTCAACTCCTGGAGTAATATTTAGGAGTTGGAGCT
GTACCAAACAGGCCCTTAGTCTCCTGATCAGGCACCTTGTGATCTTGTTGATCCTCTTTTGCCA
AACAATGTTTCATTATGTACTAATTTTTCATTATACCTTCTCTGGGCAGGTTCACAATTTCAGA
CATCTCAAGCTAGCTGCATCTCATTTAAAAGGGAAGTGTCTGCTAAAGCAGTATTAAGAGTAAG
TTGGAATATATCATAGATTCATATCTACCTCAATCTTCCTATAAACAAAATTAAGTGTTCAATT
CCTGCAAACAAATTTACTATTTTCTGTTTGGTTAGCTTATTGTGAGTTCATGACAATAAGGCAT
TTGATCAATAACCAAATTGGCATGTATCACCCTCTTTTTATTATATATGATTATATATAGATTC
TATAGAAAAATTGAATTAGGAGTTACTGTTACTCCCTCCGACCCAAAATATGACAACTTAGGAC
CAGATTGGACACCCCTGTCCAAATTCGTAGTACTAGGATATGTCCAATTCTGTCCTAGTTGCTA
TATTTTGGGACTGAGGAGTATGAACTATGAAATATTCATGTTAAAATGGTTTAGTTCAAAATAC
AGTAGATAAGGATTTTACCATACTTGATTGGTTTATTGGTTATACCCTTCCTAGCTAGTACTAA
TCGTAGTGCTCAATAGGTGCATATCTCATGGGCCATGGCATGTGCATGCTGCATACATTTAAAG
ATAAGGTGCTTTGAATTGTTAATTAGTAGATAAAACTGCATCAGTACCACTACAATTTTGATGG
TATCAACAAAACATTTCAGTATTTCACCTCTAATATATACCAGCAAGTTGGTCTAAAAATTCGA
AATACCTCTTCTGTTACATTTGAAGGCAACGGTGTTAGATAAGGGTGATTTATTGATTTTGTCC
TTACGTGAATATTAAATTGTTGCACTACCAAATCTCACATCTCTCCAGCAGCCAGTAGTAGTGG
CCGGCGGCATCATTAGTGTCGCTGGAGGTGGGCAACAAGTTAATGGAGCAAAGAGACGTGGGCG
GTCAAGGCATCAGAGCGTCTGCAGCCTGGCCGAGACCCCCACCTCTGAGCGGCCTCACCATGAG
GGTCAGTGTGAGCAGTGTGGCTGGGCTGAGAGCATTGGCTGTGGATGCATACAACCAGGCTGAG
GACTGCACTGCCAGGTGGCCTCAGATGTTGACACAGGTCCTAGGTGGAGCCTAATGAGATCAAG
ATCATAAGAACATGCTTTTCCTGGTTTCTTGCTTCCCTCTTAGCACGGTAGATTGAGCAGCCAA
GCCAAGTAGTGTCACCTCCATGATGAAGACAGCAAGCAGTGGGTATTGCAGTCATTCTGCGTGG
TAAAAAAAAGGGGTCAAAACCGAAATAGGAACAAAGCATGACAGGGGATGTAATGTTCTGATGT
TATTTATTGGGATCACTGAAACTCTGGTGGTATAGATGCAGTTTTTTCTTAATAGTAGTACTAA
AAGAAGCAATATTATCCCTGGTACATGGTCAATCTCAATGATTAATATATGTTCTGAATTATTC
ATGATGCTTTACCTCCAGTTACTGAACTTCAAAACTGATGAAAGGGAAAATGCTAGCTTGCTTA
TCTGCATACTTCACTGTCAGATCTTCTCATTGACTGCTTTTTTGTGCGAACGCTATTGACAACA
GAGCGTAAGATGCAATGCCACTCAGACCCAAAGTGCTCAGCGGAAATCTTCAACTGCAACCGTC
AAACGATCTGACCCCAAAGGTAGATCTGCCTCTAATTGAATTTTATTCTATAGGTGGCAGGAAC
GCAATCGCTTAATTTCACTTTCTGTCCTGTGACTTTCAGGAAAAACTCAGGGGCCAAAATTGGA
TGATGGGAGCGGTG
						
					

			
		

Sequences
Splice junction sequence	TTATTCTATAGGTGGCAGGAACGCAATCGCTTAATTTCACTTTCTGTCCTGTGACTTTCAGGAA AAACTCAGGGGCCAAAATTGGATGATGGGAGCGGTGgctttcctcctctctcccatcgccttcc tcctctcctccctttcctcccaggcggcggcggcgccctcagcagcaggatccaccctcgcgcc accccagg
Assembled circRNA sequence	NA The sequence of a circRNA based on assembly using circseq-cup (Ye et al., 2016) or CIRI-full (Zheng and Zhao, 2018) or CIRCexplorer2 (Zhang et al., 2016).
Full-length trsnacripts	NA
Genomic sequence	GCTTTCCTCCTCTCTCCCATCGCCTTCCTCCTCTCCTCCCTTTCCTCCCAGGCGGCGGCGGCGC CCTCAGCAGCAGGATCCACCCTCGCGCCACCCCAGGCCGGCCGATCCGATCCCCAACGCGATCT TGTGGGGGGCGAGGCGCGGAAAGGTGGCCGCCGAATCGTCGCGTGGTTGGTTGGTTCCTAGGTG AGTGAGGGGGTCAAGGGTTATTAGAGATTTCATGATTTCATCCCGTGGGCATGTCATCCTGCCT GTTGGAGAGTTTGATAAAGACGTGGTTTCGATACTTAGTTGGGGGGGGGGGGAATAATTTGTGA TTTTAGTTTGGAGAATAGGGTTTAATCTGCCGCAGCGGTTCTTTGTTTTTGGGAGGTAACCTGT ACAAAGATCATGCTAATCCCCTTCATGATCATTTTTTTTTGGTTATTGGGAAATTTTCCTGAAC CGTGCTCCCTGTAGAACCCTGCAAAAACAGGATCGTGTTGACGGCAGTGGTTAGCATTGTTAAA AATTGGGGATCATGGTTACTGTTATAGATTTTTTTTTGTTTTTTACTTATGGGGGTAACACTAT CTGTTGGATAAAATCCATCATCTTGATGATTGTTAGCTGCCCAATTGTTTAAAACTAATGGGTG TCGGGACGATTGAGGTGTTGAGCATATGGGGTGGGATCTCGACTACACTTTTAAAAGCACTATG GTGATATCGGAGTTGTATGACAAGTATCATACTTTTCAAACCTGTGTTGTGACTTAATCCCTCC GTTCCATATTATAAGACTTTCCAGCATTACCCACGTTCATATAGATGTTAATGATGTGTCTAGA TTCATTAACATCTATATGAATGTGGGTAATGCTAGAAAGTCTTATAATATGAAACGGAGGAAGT ATTATTTTTATATGCATGATAACATTATCCCTGAGCATACTGTGTTGTTTCTCAAGCAGTCAAA TCAGGTTTGAGATGCCATGTATTTATGCACTCTGTAGTAAATAGTTATTTCATTTTGCAATCAT TTGGCATGGCATTTCATTTCTTTTCATATGTGACAATGTTATGTTGCTTGATTGTAGATCTTAA AAGTGTCCTCCATGTCAACACTTGTCACGTGCTCACTGCCAGGGGCTGTAACCACTCATGCATC AACCAGGAGATTTGGAGGTAAATAATTGGCTTTAACATTTATATTTGTTTGCTTTATAGAGTAA TTCATGAATTGCTGTCCTCAACATTGTTTCATGATTTCACAATGTTTGTCTCTCCCTTACTCGT TGTTAAGTGTCTTTGGCCCTCTTCTCTTTGCATCGTGACAGTTAAAAAAATTCCACGGATTGAG AATATGTAATACCTCATTACTTCTTAAATTCATCTGTGTTTGTTGACTTGCTCTCAATTTTGAT GTCCTAATAGTGCACTAAGAAAATGTAGGTATGTAAGCATCCATTTGGACTATGCAATATAGTA TACAAATATGACAAGTAGCCCGAAACCTGTCTGCCTGATCCTTTTGCTCCTTTTTTTTAGAGCA CCCTTGAGTTTATGTTAAGAGGGTTCTTTAGGGAAATTGGTAAACTGTTTCATTTTCCAAATCA TAAGTTCACATAACACGTGGTTTGGGAATTATGGGTCGAAATCACATCATTAGGGCCTGTTTGG CACAGCTCTAGCTCCAGCTCCACCCCTCCTGGAGCTGGAGCTCAGCCAAACAGTTTCAGCTCCA CTAATACTGGGAGTGGAGTTGGGTGGAGCTCTCTCACAAAATGTACTAGAGTTGTGGAGCTGGG TTTAGGCAGCTCCACAACTCCACTCTAGACTCAACTCCTGGAGTAATATTTAGGAGTTGGAGCT GTACCAAACAGGCCCTTAGTCTCCTGATCAGGCACCTTGTGATCTTGTTGATCCTCTTTTGCCA AACAATGTTTCATTATGTACTAATTTTTCATTATACCTTCTCTGGGCAGGTTCACAATTTCAGA CATCTCAAGCTAGCTGCATCTCATTTAAAAGGGAAGTGTCTGCTAAAGCAGTATTAAGAGTAAG TTGGAATATATCATAGATTCATATCTACCTCAATCTTCCTATAAACAAAATTAAGTGTTCAATT CCTGCAAACAAATTTACTATTTTCTGTTTGGTTAGCTTATTGTGAGTTCATGACAATAAGGCAT TTGATCAATAACCAAATTGGCATGTATCACCCTCTTTTTATTATATATGATTATATATAGATTC TATAGAAAAATTGAATTAGGAGTTACTGTTACTCCCTCCGACCCAAAATATGACAACTTAGGAC CAGATTGGACACCCCTGTCCAAATTCGTAGTACTAGGATATGTCCAATTCTGTCCTAGTTGCTA TATTTTGGGACTGAGGAGTATGAACTATGAAATATTCATGTTAAAATGGTTTAGTTCAAAATAC AGTAGATAAGGATTTTACCATACTTGATTGGTTTATTGGTTATACCCTTCCTAGCTAGTACTAA TCGTAGTGCTCAATAGGTGCATATCTCATGGGCCATGGCATGTGCATGCTGCATACATTTAAAG ATAAGGTGCTTTGAATTGTTAATTAGTAGATAAAACTGCATCAGTACCACTACAATTTTGATGG TATCAACAAAACATTTCAGTATTTCACCTCTAATATATACCAGCAAGTTGGTCTAAAAATTCGA AATACCTCTTCTGTTACATTTGAAGGCAACGGTGTTAGATAAGGGTGATTTATTGATTTTGTCC TTACGTGAATATTAAATTGTTGCACTACCAAATCTCACATCTCTCCAGCAGCCAGTAGTAGTGG CCGGCGGCATCATTAGTGTCGCTGGAGGTGGGCAACAAGTTAATGGAGCAAAGAGACGTGGGCG GTCAAGGCATCAGAGCGTCTGCAGCCTGGCCGAGACCCCCACCTCTGAGCGGCCTCACCATGAG GGTCAGTGTGAGCAGTGTGGCTGGGCTGAGAGCATTGGCTGTGGATGCATACAACCAGGCTGAG GACTGCACTGCCAGGTGGCCTCAGATGTTGACACAGGTCCTAGGTGGAGCCTAATGAGATCAAG ATCATAAGAACATGCTTTTCCTGGTTTCTTGCTTCCCTCTTAGCACGGTAGATTGAGCAGCCAA GCCAAGTAGTGTCACCTCCATGATGAAGACAGCAAGCAGTGGGTATTGCAGTCATTCTGCGTGG TAAAAAAAAGGGGTCAAAACCGAAATAGGAACAAAGCATGACAGGGGATGTAATGTTCTGATGT TATTTATTGGGATCACTGAAACTCTGGTGGTATAGATGCAGTTTTTTCTTAATAGTAGTACTAA AAGAAGCAATATTATCCCTGGTACATGGTCAATCTCAATGATTAATATATGTTCTGAATTATTC ATGATGCTTTACCTCCAGTTACTGAACTTCAAAACTGATGAAAGGGAAAATGCTAGCTTGCTTA TCTGCATACTTCACTGTCAGATCTTCTCATTGACTGCTTTTTTGTGCGAACGCTATTGACAACA GAGCGTAAGATGCAATGCCACTCAGACCCAAAGTGCTCAGCGGAAATCTTCAACTGCAACCGTC AAACGATCTGACCCCAAAGGTAGATCTGCCTCTAATTGAATTTTATTCTATAGGTGGCAGGAAC GCAATCGCTTAATTTCACTTTCTGTCCTGTGACTTTCAGGAAAAACTCAGGGGCCAAAATTGGA TGATGGGAGCGGTG

			
						 Conservation Information
					
						Conserved circRNAs
						
							NA						
					
						PMCS
						0.091557105

Conservation Information
Conserved circRNAs	NA
PMCS	0.091557105

			
						 Functional Information
					
						Coding potential
						N
					
						Potential coding position
						
							NA
						
						Potential amino acid sequence
						
							NA
						
						Sponge-miRNAs
						
							NA						
					
						circRNA-miRNA-mRNA network
						 VISUALIZATION
					
						Potential function description
						NA

Functional Information
Coding potential	N
Potential coding position	NA
Potential amino acid sequence	NA
Sponge-miRNAs	NA
circRNA-miRNA-mRNA network	VISUALIZATION
Potential function description	NA

			
						 Other Information
					
						References
						Lu et al., 2015

circRNA

Detail information of Os02g0274000_circ_g.1

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