Detail information of BGIOSGA033858_circ_g.4


General Information
CircRNA Name BGIOSGA033858_circ_g.4
ID in PlantcircBase osi_circ_003178
Alias 11:16422630|16424751
Organism Oryza sativa ssp. indica
Position chr11: 16422630-16424751  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   e-circRNA
Identification method find_circ
Parent gene BGIOSGA033858
Parent gene annotation NA
Parent gene strand -
Alternative splicing BGIOSGA033858_circ_g.5
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered BGIOSGA033858-TA:5
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   GGTTGCTGGGGTCGAGCTCCTCCATGATGAGGCGAGCGTACTCCTCGGACTGCTCCTGCACCTT
GGACAGCTTGTTGGCCGACGCGCTCAGCGTGATAATcttgggttggtcatggcgccgtcgcggt
cgtactccgcccggagcaacccgctcttcccttccgtcggtggccggcagacctgaaaaacata
atattgtc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTTGGGTTGGTCATGGCGCCGTCGCGGTCGTACTCCGCCCGGAGCAACCCGCTCTTCCCTTCCG
TCGGTGGCCGGCAGACCTGAAAAACATAATATTGTCATGATTAATTCTTTTTTACTTTGCAAAA
AATGTACAAGTCATTTGTTAAGCTAAAATATTAGTGATAGTAACCGTGACAGCGATGATAATAA
TAATGATGATGAGGAGGAGATTTGTAGGGGCTTAAGGTTGGATAAGATTGCGAGATTTGTGACA
AATAGATGGTGAGATGGGACTAGCTGAGTACCCTTGAGAAGACGTTCTTAAGCTCCCGTGTCCA
GTCACCGAGCGTCCTGATGTGGACGCTGACGTAGTCGTCCTGTGGGGCCGACGTGATGGAGAAT
GGGTGCCTGCAGGTGGGGTCACATGGTCAACATCACATCCTTATTACAGATTATATATATATAC
ACATATATCCAGCTTATCTCCTCTGCTTTGGCTTAGCCGTCCTAATAATTATATAAAAGATGAT
GCTCAAAGCATTCCCACTTAAGGAACTTTAATTGCTTAATCAAATCAACTAGACCCACAGGTGA
TTTAATTAATTATTAGTCCAAAAGGCATCCTTATGCACTATCCTACTTCCATTTTATTTAGCCA
TGTGTGCTTTCATATATATATATATATATATATATATATATATATATATATATATATATATATA
TATATATATATATTCTGATAATCCGATCGGACGGCTCAAATCGATCGGTGTGCTTACCATTGGA
ACGGCGAGACGGCGGCACAGTTGACGAAGATGTACTGCCCACTCTTGTACTTGAAACCCTGTGG
CTTGGAGAAGTGCAGCGACAGCACATTTCCGGGGTACACCGCAACCTTGAGTATCTTCACCGGC
CTCACGCTCGACCGGAGCGCCCTCGTCAGCCTCTCGCACGCGTACAGGAACATCGGCACCGCCA
GGTACATCCACGTCTGCGTCCACGTCACCCACCATCAGCACCGCCACGTAGGATAGAGAGACGA
GGGCATGTACAATGGACTAATAGATAAAGGTTTAGTGGTACGTACCGTTTTCTTGTACCAATCC
TTGGTAAGGAAGAGGTAGTAGCCGTGGACGATGAGGAGGGCGTAGACGATGACGAAGCAGTGGT
GGGAGTACCAGAAGGCGTTGAACCCCGTGAGGCGGTTGAGCGGGCGGGGGAGGCGGAGGCGGCC
GCGGCGGAACCACGGCGTGGCGAGGGTGAACGCCACCGCCATGAGCACCAGCATCACCAGCCCC
GTCCACCCCTCCGTCCCCTTCACGAACCACCAGTAGTTGGGCGGCCGCGTGTCGCCGAAGAACC
TCTTCATCGGCTCGTACTCGGCGTCGGTGGCATGGAGCAGCCGTGGAAAATCGCAGGTAAGGTG
AGAGATGACGTGCAGCCCGGCCCCCACGGTGATCCCCACGGCGATCACCTTGTGGAAGTTGAGG
TTGTCGTCGAACGGCACGACGCGGGCGACGGCGGCGCGGTTGCGGATCCAGGTGACGGTGTTCC
GGCACACCGGGAGGAGGATGAGCGCCATGTTGAACTTGAGCGTCTCGGCGCCGCCCTTGGCGAC
GCAGACGCAGTAGCCCATGACGTGGAACACGGCGCGGTGCCGGTACTGGATGAACTTGTAGGTG
AAGAGGCCCGCGCAGATGGCGAGCCACAGGAGGAGCACCCAGACGCGGCGCCAGTTGTCCTCGA
GGAAGTAGGAGGCGCGCCGCCACCACCGCCGGAGCGGGTTGGGCTCCGCCGTCGGCCGGAGGTT
CTGGCTCAGCATCTGGCTCAGGTTCCGGCTGTTCGTCGTCCCGATCCTCACCGACTGGCTCGGC
GCTTGCAGCAGCAGCATCTCCAGGTTGTACAGCTGCAAAATCATAAAATTATTATCGGCCATTG
TTGCCGGCGACATTGACGGTGACGTCGATTCTGGACCGAAATTGTTTGAGAATTTAGTGAAATT
TGACTGAATTTTGAATATATGTACCTCGATGTAGCCGAGGTTGCTGGGGTCGAGCTCCTCCATG
ATGAGGCGAGCGTACTCCTCGGACTGCTCCTGCACCTTGGACAGCTTGTTGGCCGACGCGCTCA
GCGTGATAAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential Y
Potential coding position 16424678-16424741(-)
16424676-16422933(+)
16424006-16422980(+)
Potential amino acid sequence MEELDPSNLGYIELYNLEMLLLQAPSQSVRIGTTNSRNLSQMLSQNLRPTAEPNPLRRWWRRAS
YFLEDNWRRVWVLLLWLAICAGLFTYKFIQYRHRAVFHVMGYCVCVAKGGAETLKFNMALILLP
VCRNTVTWIRNRAAVARVVPFDDNLNFHKVIAVGITVGAGLHVISHLTCDFPRLLHATDAEYEP
MKRFFGDTRPPNYWWFVKGTEGWTGLVMLVLMAVAFTLATPWFRRGRLRLPRPLNRLTGFNAFW
YSHHCFVIVYALLIVHGYYLFLTKDWYKKTTWMYLAVPMFLYACERLTRALRSSVRPVKILKVA
VYPGNVLSLHFSKPQGFKYKSGQYIFVNCAAVSPFQWHPFSITSAPQDDYVSVHIRTLGDWTRE
LKNVFSRVCRPPTEGKSGLLRAEYDRDGAMTNPRLSR*(-)
MMRRAYSSDCSCTLDSLLADALSVIILGWSWRRRGRTPPGATRSSLPSVAGRPLRRRS*(+)
MEQPWKIAGKVRDDVQPGPHGDPHGDHLVEVEVVVERHDAGDGGAVADPGDGVPAHREEDERHV
ELERLGAALGDADAVAHDVEHGAVPVLDELVGEEARADGEPQEEHPDAAPVVLEEVGGAPPPPP
ERVGLRRRPEVLAQHLAQVPAVRRPDPHRLARRLQQQHLQVVQLDVAEVAGVELLHDEASVLLG
LLLHLGQLVGRRAQRDNLGLVMAPSRSYSARSNPLFPSVGGRQTLEKTFLSSRVQSPSVLMWTL
T*(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Huang et al., 2021