Detail information of BGIOSGA016467_circ_g.4


General Information
CircRNA Name BGIOSGA016467_circ_g.4
ID in PlantcircBase osi_circ_014399
Alias Chr04:22460793_22461452(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 20171728-20172385  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ei-circRNA
Identification method find_circ
Parent gene BGIOSGA016467
Parent gene annotation NA
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   No-No
Splicing signals   GT-CA
Number of exons covered BGIOSGA016467-TA:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   AAGGTATGGCAGTTGGGAGGGCTGTGGACTTGACAAAACTAAATGGTTATGGTGATCTTCGCAG
CAAGTTGGAGGAGATGTTTGATATACAGGGGGACTTggactatggaaacccccatctgaagcag
cccaaactctctcattttcggaaccacaacgggctcgagagatatttccttctattcctgcatc
aatcttct
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GGACTATGGAAACCCCCATCTGAAGCAGCCCAAACTCTCTCATTTTCGGAACCACAACGGGCTC
GAGAGATATTTCCTTCTATTCCTGCATCAATCTTCTCAGCATCATCACATGTTGAATTCAATTC
AAAGAACGAGCCATCCATACTAAGCAATCAGTTCTACTGGTCAATGAGGGATTCAAAAACTGAT
TCTTTTTCTGCTAGCACTAACAAAGCAAGAGTTGAAAGAAAGCAAGAACCAACTACTATGGGTT
GCAGATTATTTGGAATTGAAATAAGCTCAGCTGTAGAAGAAGCCCTGCCTGCAGCTACTGTTTC
AGGTGTCGGTTATGATCAAACTGTTCTCTCTGTAGATGTGGACTCTGATCAGATCTCACAGCCA
TCTAATGGCAATAAATCCGATGCCCCTGGAACAAGCAGTGAACGTTCTCCTCTGAGTCCCAAAG
TCGTCAAGTGAGGAGCTGCACAAAGGTGAGAGTTTGTCACGTATTTCCATTTTCAAGATGCTGA
AGCATACAAAGAACTTAATTACTTTTCCTTGTGCAGGTAATTATGCAAGGTATGGCAGTTGGGA
GGGCTGTGGACTTGACAAAACTAAATGGTTATGGTGATCTTCGCAGCAAGTTGGAGGAGATGTT
TGATATACAGGGGGACTT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021