Detailed infomation of each circRNA
General Information | |
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CircRNA Name | AT3G02530_circ_g.4 |
ID in PlantcircBase | ath_circ_019325 |
Alias | NA |
Organism | Arabidpsis thaliana |
Position | chr3: 531153-531796 JBrowse» |
Reference genome | TAIR10.38 |
Type | e-circRNA |
Identification method | CIRCexplorer, PcircRNA_finder |
Parent gene | AT3G02530 |
Parent gene annotation |
T-complex protein 1 subunit zeta 1 |
Parent gene strand | - |
Alternative splicing | AT3G02530_circ_g.2 AT3G02530_circ_g.3 AT3G02530_circ_g.5 |
Support reads | 21 |
Tissues | whole_plant |
Exon boundary | Yes-Yes |
Splicing signals | CT-AC |
Number of exons covered | AT3G02530.1:3 |
Conservation Information | |
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Conserved circRNAs | NA |
PMCS | 0.219693314 |
Functional Information | |
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Coding potential | Y |
Potential coding position |
531773-531155(-) |
Potential amino acid sequence |
MIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKT PVVMGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNSQIQNPTAIMIARTAVAQDDISGDG TTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPVVMGDEPDKEILKMV ARTTLRTKLYEGLADQLTDIVVNSQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSE RCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPVVMGDEPDKEILKMVARTTLRTKLYEGLADQ LTDIVVNSQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF EIAKRATLQFLDTFKTPVVMGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNS(-) |
Sponge-miRNAs | NA |
circRNA-miRNA-mRNA network | VISUALIZATION |
Potential function description | NA |
Other Information | |
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References | Chu et al., 2017 |