Detail information of AT3G02530_circ_g.4


General Information
CircRNA Name AT3G02530_circ_g.4
ID in PlantcircBase ath_circ_019325
Alias NA
Organism Arabidpsis thaliana
Position chr3: 531153-531796  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer, PcircRNA_finder
Parent gene AT3G02530
Parent gene annotation T-complex protein 1 subunit zeta 1
Parent gene strand -
Alternative splicing AT3G02530_circ_g.2 AT3G02530_circ_g.3 AT3G02530_circ_g.5
Support reads 21
Tissues whole_plant
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered AT3G02530.1:3
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CACCAATGAAGATGACAGTAGAAGTAGTACCATCACCACTTATGTCATCCTGAGCAACAGCTGT
CCTGGCAATCATGATGGCTGTTGGATTTTGAATTTGcgaattaacaacaatatcagtcagttga
tcagctaagccttcatacagctaagtaagccagaaaaaaaagaccgtcagcaagcgaagagaag
agttggtg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CGAATTAACAACAATATCAGTCAGTTGATCAGCTAAGCCTTCATACAGCTAAGTAAGCCAGAAA
AAAAAGACCGTCAGCAAGCGAAGAGAAGAGTTGGTGATAACAAAAAAGATATAAATATCAGCAA
ACAAAGAATACCTTAGTTCTTAGCGTTGTCCTGGCAACCATTTTCAGAATCTCTTTATCAGGCT
CATCACCCATAACCACAGGTGTCTTGAAAGTGTCGAGAAACTGGAGAGTGGCTCTTTTTGCAAT
CTCGAAACCATCAACTAAGACACGTGGATGCATTCCTGAGACATAGTAAACCTTTCATAAGGAC
CATTTCTCACTGAGATTAACCAAAACATGACAAGGTAGCTGAAGAAGAAAAGTATTATATGTTA
GCCATGACAAACAGATACAGAAAATGAATGGCATCAGATCCAACTGATTATCTAGAACAGACAT
AGCGAAGCATAAAACTACCCTACTCAAAGTATAATGCAGAGAAAAGCTAGTTTGGCTAACCTTC
ATCGATGCAACGCTCCGACTGTTTCATAAGCTCACCAATGAAGATGACAGTAGAAGTAGTACCA
TCACCACTTATGTCATCCTGAGCAACAGCTGTCCTGGCAATCATGATGGCTGTTGGATTTTGAA
TTTG
Conservation Information
Conserved circRNAs NA
PMCS 0.219693314
Functional Information
Coding potential Y
Potential coding position 531773-531155(-)
Potential amino acid sequence MIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKT
PVVMGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNSQIQNPTAIMIARTAVAQDDISGDG
TTSTVIFIGELMKQSERCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPVVMGDEPDKEILKMV
ARTTLRTKLYEGLADQLTDIVVNSQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSE
RCIDEGMHPRVLVDGFEIAKRATLQFLDTFKTPVVMGDEPDKEILKMVARTTLRTKLYEGLADQ
LTDIVVNSQIQNPTAIMIARTAVAQDDISGDGTTSTVIFIGELMKQSERCIDEGMHPRVLVDGF
EIAKRATLQFLDTFKTPVVMGDEPDKEILKMVARTTLRTKLYEGLADQLTDIVVNS(-)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017