Detail information of Zm00001d044497_circ_g.1


General Information
CircRNA Name Zm00001d044497_circ_g.1
ID in PlantcircBase zma_circ_007914
Alias zma_circ_0001392
Organism Zea mays
Position chr3: 229714436-229719112  JBrowse»
Reference genome AGPv4.38
Type   u-circRNA
Identification method find_circ
Parent gene Zm00001d044497
Parent gene annotation Thioredoxin family Trp26
Parent gene strand -
Alternative splicing NA
Support reads NA
Tissues leaf, root
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Zm00001d044497_T001:10
Zm00001d044497_T002:10
Zm00001d044497_T004:10
Zm00001d044497_T007:10
Zm00001d044497_T003:10
Zm00001d044497_T005:10
Zm00001d044497_T006:4
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCATGGCTCCTCGTGCTCCTCCCCCGACCGAATGCGGCCACCAGCAGCCGTGTCCTCCTTCGAT
TTGCTATCGTCTTGTCGGTTTTCGGAGACCGGACTCaagagaccaactctgatgatagagcatt
agcaaaccagtcacagcgtccacgggtacagagttatgtgctcaaaagtcaagctaaaagtcta
gcagctgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence AAGAGACCAACTCTGATGATAGAGCATTAGCAAACCAGTCACAGCGTCCACGGGTACAGAGTTA
TGTGCTCAAAAGTCAAGCTAAAAGTCTAGCAGCTGGGAATTATCTATTTATCTTATTGATCGAC
GAAGCGAGGTTCAAATTTGCTTTCAGGCAACGCAGTACCCAGCTTCCGCTTCTCTAGCTCTGCT
GTGGATCCATACCCAACTATTAGAAAATAAACGTTAAAAAATGAGAGAAGGAAGGCAAGCTAGA
ATAATCAGCCGAGAAATTCAGCCTGTATGCTTTGGAACGGCAGATATGCCTCACCTTGTATGAT
GTCTACTCCACATGCGAGAAACCTCCTCCAGTCTCAGATTTTGTTCTGCACGGGAGAGAGAAAT
CGGATCACACCTGGCCTCAGTTGCCAGCACGACAAGCTAAAGTGTTATATCACTTGTTAACGAT
GAGTGAAGCAAATCATTCCTTTTCAATACAATATCCTTATCGCTAGCATTCAGCACTTGTACGA
TGGGTCATTGATGATCATTTATCCCTTTGTAAACCCCCAGTTTAAATGTTACTCCCTCCATTAT
AAGTTGAACATCTCTAACTTCGGTAAATACTTCAAAAATATTGTTTAAGTTCAAATACATACAC
ATGGAGAATTTAAGGGACTGTTCAGTATAGCTTCATTTGATTCTGATTCTCTATGGAAGTTGAT
TTTCTGAGACAGTGGTTTTGTGGCTAAAAATGATTCTCTTTGATTCTTTAGCATGAACTCTCAA
AATCACGATGGACAATCACTTCACACAATCAGGAGAGCTACTTTTTTCAACTCCCAGCCTCTTA
ATTCATTTCAGAGAATCGTTTCACACAATCAGCAAATAATCGCTTCCCTCTGAAAAACTGTTTG
ACAGAGCTCCTGCTGGATTCAGCAGAGAATCAGCTCTAAGAGCTCTAGCAAATAAGGCCCAAAG
AAACAAAATTGATGTTATAGATGGTGTATTTTTTTATAACTAAGTAAAAGTTTTTTTAAAAATG
ATTTAGGACAAAAGCTAAAGTGATATATAATTTGGAATGGAAGTAGCATAGCAAATGATGCGGG
TTGATTTAACAATATGGAAATTAGGATTAGAAAGGAACCAGCAGCTCCACCTACCACCTAGAGG
CCTGCTTCCAGAAGGATATGATTTTAAGCCTGCTGGAAGACTGGAACAATTTTTGGGCTAGTTT
GGCAACCTCATTTTCTCAAGGGATTTACATTTTCCCAATGGAAATTAGTTCATTTTCTCTTGGA
AAAATGGAAATCCCTTGGAAAAATGGGGTTGCCAAACTAGGACCTAAGAACCTTCTCTTCCTAT
TCTGAGGTACATTAGCGAAATCACTAACTTGAACACTTCCTTAAGCTAAAGAGATATTTGGCTC
TGGGGGAACTATTTAGGTCATACAGCATTATAAAATTTCCCTTGTGCAACTGTACTACTAGTAG
ACTTGATGTGAAACATTAAGTAGATCAATTATAACAAAGCTTACTTGTGATCAGAAGGATTGGG
CATGACTTCATATACAATTGTTGCAACTACATCCCTTTTGTTCTGGGACAAGCAGCACGAAGCA
ATAAGAATCAGTATGGCGTTCCACTGTTTTTTCTTTATTATGCATAAATAGCAAAACAAAACTT
AAGTACCTGAGTGGCTTCACCACGTAGTCCAATGTAATAAATTTTAGTTGTATCACCACCAAAG
TTGTCAGAGAAATGCAGAGTTAGGTTAGCCACACCTTGGAACCTTGAATATCTGAGAAACAAGG
GAGAAAGGTATGAAGAGCAAATGAGAAATTATTCCATGTACAAACTACAAATAGAACTTAAGAG
CATACTACTACCTCCATTTTCTTACATGTCACATTAGCTTCGTCATAAGTCAAACATTACTAAC
TTTGACCATCTATTTCAAAAAAATCTTCTAGTTTCATAAAATACAAATTATATATTATGGAAGT
ATTTTCATAGTGAATACAAAAACATAAAACTTATTCCATGAACCTATAATTTTTTTAAATCGAT
GCCAAAGATACAAATGTTTGACTTAGGACAAAGCTAATAAGGCATGCAATAAAAAACAGAGGGA
GTAGTTACAAGCCATTCAGTAGACAGAAAAAACAAAAGTGTCCTAGAGTAGTCCAGTACCTACA
TGCAAAATGTTTATTAATTTGCACAGGATCAGGGAGAACATTTAATGAATTTGAGTCTATCACA
AGCTTTATGAGTGTTTACCAAATGAACATGTGTTCAGAAAGACATCTGAAGCTCTACGAACGTG
ATTAAGAGAAAATATTTATCTGTTACCAAAATCAAAGGGCACTGGAAGGAAACGAACATACCTT
GTTTGGTACTCAAGAGCTCCTTGCAGGTTCTCTGCTAATTCCCATTCCTAGGAGAAATGTACAT
CATTTAAGTGGAGTTTCCACTTATGACACGGATAAGGAAAAAAAAAGAAATTGAATACTTACCT
GCACTGGCTGCATGTTTTGAGCATCAGAAAAGTCAATACCTTCTCTATTGATAAACCTGGATTA
TGTCAAGGTAATTTTTCATAAATATCATGCCATGAGAAAGAGAAGGACAAGGAAAATAAAAGCT
ATATCTCTAAAACTAACGCTCTCATTCTTGACGGGCTTGTTCCATCAGCACCACCAACAACAGA
AATGCTCTTGATCTTAACATCTGATGTGAACCTACAACCAACAGGAAGACAGGATTACACATAT
TTAACATTTTTTGGATGAGAACTATAGACAAAAATAGGGGAAGGTATTTCTTAGCTCTGAAACC
AAATAAAGATAATATTCCACCAAAAGTGAAATATCAACATACAGAAATTCATGGAGGTCATGAA
TTCAATGCAAGTATACGTACAGACTGAAGAAGTAACTTCTGCAAGGGCATGCAATATCAACTCA
ACATAGTGCCGGATACACACTAAAAAGAAGCATTCTCATTTCCTTAGGAATTAGGATATTTCAC
AAAATTGATGGAAGGATGTGCAAAAAGGGCATGGCATATGTTCTGCAGACATCATTTCAACGAA
TTATTTCTGGGTATGTGGGTTTTAAACCTCTGAAAGAAGTATTACTTTACTAGTGTTAATGCTG
AGTACCAAATCACCAAAAGACTAAAATAAAGGAGAAAGAAGAATAAATATCAATAACTACAACC
TGTTCGAGCACTGCCCTGGAGTGAACTGTTGTCTGTTGAGAACAATCACAATACAAAAAGGAAA
AAAACGATGAACTATTCCATATAATAAATATACTTCTCCTGAAACACCACATAGTTCATAAACT
GAATACCTCAGGCAATCTTATGTTTGAGGAAATTAGTTAAAGAACACTTCATCACGTTGCTATA
CTTCAACTATAAGTCATGAAGCAAATTAGAATTAATCTTTCAAAATAAAATAAAGGAAAACAAG
TAACAATTGGGGGAGCACATGAATATACATTAAACGAGCAAGTGACTTCAGCTACTTACGGGAT
GAAAATAAGTAGCTCAGGGTCACCCTCATTACTCTCCAGAAAACCCTGGTGCAGCAAAAATGCT
CATGAGAATGCAGATTTTACCAATGATGAGGAACTTAAAGAACAGGATCTGAGCTAAAAAATCA
CTAATTATATAAATACAAAACGGAAACTTGCTTGTATAACAATTTTTCTGAACTGTTTTGAAGA
CACGCAGCTCTCCAGACCCACTTTACTATTTAGCACTGTTTAGTTACTTAATTTTCCTATGTGA
TACCACACTCCTTTCCTTCCTCCTTCCTCTACAGCTTAGTCCACCACTCCCACAGCAGTTAAAC
CAAGCCCATGTTCCTACCTTCACTTCATACCATGCTGTCAATCAAGCATGCTAGAGCATCAAGC
AATCATGAAGGAGCTAATCTATATAATACTTAAACATGTGCCATATTTCACAGACGACGATAAT
TCACGAGATATGCCTTCGTTTTGGAGATTTTAGATAACAACAGATGCATTCTCGACAAAGGAAG
AAAAAAGGTCATTAGAAATTTATTACTCCTAAGTCCTAATATAATAAGAAAAGGACAACTGGTC
TTAGTGGTTACTGAACTAGATGTACACATTCTGCATCTCCTAACTGAGCCGGTGAACCCTAGCT
TCCATTAAAAAATAAACTAAGGCAACGTGGACATGAGGAGGCATTGGTACATACCCCCGAGGTG
TCAAGGCGCTGCTCCCAGGGCTTGAAGACGGACTTGACGCTCCCGGGCACCGATTCGTTGAGAG
CCACCACCTGCGCGCACGAGATCGTGTCAGCCGCCGCCCTAAATCCTTGTTCACCGCCTATTGT
ACTGTATACTGTCGCACAATCCGATGCGCCGCGGGGTACCAACAGAACCTTACGAAGCCGTCGA
AAACAAAGGCACAATAAGGAGGGAGGTGGGGCAGCGGATCAATCTGGCAACTGGTGAGAGGGAG
TGGGGGGATTACAGGACCTTGGGGACGTCGATGTGGTTGTAGAGCGACCAGTCGGCGGCGCAGT
TGTGATCCTCGCAGCTGTGGTCGTGCAGGCAGGCCATGGCTCCTCGTGCTCCTCCCCCGACCGA
ATGCGGCCACCAGCAGCCGTGTCCTCCTTCGATTTGCTATCGTCTTGTCGGTTTTCGGAGACCG
GACTC
Conservation Information
Conserved circRNAs NA
PMCS 0.025092869
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ma et al., 2021b