Detail information of Os10g0188100_circ_g.4


General Information
CircRNA Name Os10g0188100_circ_g.4
ID in PlantcircBase osa_circ_006360
Alias Os10circ01703
Organism Oryza sativa
Position chr10: 6083432-6084353  JBrowse»
Reference genome IRGSP-1.0.38
Type   u-circRNA
Identification method SMALT, Segemehl
Parent gene Os10g0188100
Parent gene annotation Conserved hypothetical protein. (Os10t0188100-01);Similar to tra
nscription initiation factor IIF, alpha subunit. (Os10t0188100-0
2);Transcription initiation factor IIF, alpha subunit family pro
tein. (Os10t0188100-03);Conserved hypothetical protein. (Os10t01
88100-04)
Parent gene strand -
Alternative splicing Os10g0188100_circ_g.1 Os10g0188100_circ_g.2 Os10g0188100_circ_g.3
Support reads 2
Tissues leaf
Exon boundary   Yes-No
Splicing signals   CT-AC
Number of exons covered Os10t0188100-02:2
Os10t0188100-04:2
Os10t0188100-03:2
Os10t0188100-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CCAAATCGAAGTCCAGATCCTTTCCACCTTCCTCATCGTCATCCATACTTTTTTTGTTGAGCGC
AAGCCTATTTTTGCGTGCAGCTTCCTCTTCTTCATCctgcttaatttcaggaggagcgggaatc
tcaggagctaaatctgcccgctcctctgggtctatatccacagcctcatcgtcgtcagtgaatg
tttcttcg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CTGCTTAATTTCAGGAGGAGCGGGAATCTCAGGAGCTAAATCTGCCCGCTCCTCTGGGTCTATA
TCCACAGCCTCATCGTCGTCAGTGAATGTTTCTTCGTGCTCCCAGTCATCACCTGACAAGGCAA
TTCCCAACAGAGATGTCAATCTCAGACTTCAAAATGCCCAAAAAATATATAGGCATTGTTACTG
TTTTATTCGCGTTGCACAAATTTCAGAATTGATCTTCCGCAAAAGAGCAAATGAAGCCCAATGT
GATGGTGAATTGGGGATGTTATGCATTGTAGCTGAGAATTTGCTAAAAAATATATAAACACAAG
TAACATGTGGAGGTCATCCAATGTAAAGAAGGCCATCAGACAAAAGGAATTACCACAAGCTTAT
GCTTCATGGTGTCTATAGACTCTTAAACAAATTTGATGAGAATGGCCTATAAAAAACATATCGT
ATTTTAAAAGTGTTACTAAATAAGTACTCTGAATCCACAACTGATTTTACATATGTCATGAAAT
CTCACTGGAAGAACCAAATGCATTCCAATTTTTGTCATGAAACCACACTGGCAGTACAAAATGC
ATTTTAAATTTTTAAGTATATTAGGCATTAATAACCTCAAACAACACATTACAGAATATGCCAA
TAACAAATATATATCTCTAAAAAAATTAAACATATGAAAAAGAAACTTCAGGCCAAGAAAAAGT
AAAAACATCAAGGTACTATGCAATGGTAGTATAAATACAACTATTAGTTGTGTAGATCAACTGC
AAAAGTATTGTTTTGAAGCAAGATTCAGAAGCACACCTTTTTCAATTTCATCATCCAAATCGAA
GTCCAGATCCTTTCCACCTTCCTCATCGTCATCCATACTTTTTTTGTTGAGCGCAAGCCTATTT
TTGCGTGCAGCTTCCTCTTCTTCATC
Conservation Information
Conserved circRNAs osi_circ_002763*
PMCS 0.396587211
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015