Detail information of Csa1G561390_circ_g.1


General Information
CircRNA Name Csa1G561390_circ_g.1
ID in PlantcircBase csa_circ_000467
Alias Chr1:20537658_20541601
Organism Cucumis sativus
Position chrChr1: 20537658-20541601  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method Find_circ
Parent gene Csa1G561390
Parent gene annotation NA
Parent gene strand +
Alternative splicing Csa1G561390_circ_g.2 Csa1G561390_circ_g.3
Support reads NA
Tissues leaf
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered Csa1G561390.1:7
Csa1G561390.3:7
Csa1G561390.2:7
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ACAATATCTTTTATCATTCAATTTTTTTCCTGTACAATTTTTCAGGATGGAGTCATTTTTCAAG
CCTGTTACTAATCCTTCAGTATCCATTAAACGAAAGgtttatgctgtggcatcagaagacatgg
attcactaacatttggatctcccagatttcttcgtcacttaatggatcccagctcaaggaagat
cccagtta
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTTATGCTGTGGCATCAGAAGACATGGATTCACTAACATTTGGATCTCCCAGATTTCTTCGTC
ACTTAATGGATCCCAGCTCAAGGAAGATCCCAGTTATGGAATTTGAAGTGGCAAAGGTGATTTG
TCTTCATCTCATCTGGCTATTTGCTTTTGTTACCATTCACCAAATAATTTGTTTCATTTTAGAT
TTTGGAAGAGCTGAACCTCACCATGGATCAATTTATTGATTTGTGCATTCTTTCTGGATGTGAT
TATTGTGACAATATCCGAGGTATTTGGATTCTACATGCATTTTATTGCCCTACTGATATTTTTT
GATATCCGTGAGTGTTCGGGCCAACTTATTGTCCTACTGATATTGATATTCTACTTTTGTTGTG
TCTATGCCATTCTTGTTTTATAGTTTTGAATGTAGAGCCCTTATGCTTTACTCCACAGGTATTG
GGGGGCTGACTGCTCTAAAGCTTATCCGTCAACATGGGTCTATAGAGAGTATATTAGAGAACAT
AAATAAAGAGAGGTGATCTTTTTCTAGAATTAATATGTATCACAAAGTGCAATTTTATCTTTAG
TATTCTTAAACTTGTTTTCTTTTTTAAAAAGGAAGAATATGCTTAAACTTGTTTACTCAATTTG
ATGTATGCATGGATACCTCATTGTTTTGGTTTTTAGCTTGGTTGGATATTATGAGGGTGCTATG
GGGTGCCAACCTAGTTGAGATGTCCAGGTGCACCTCCTGATCCATGGTTTACATGCTCGTTGTA
TAATTCTCTTGTACTATGAGCTTTTGTCTCATTATTAATTTATTAATAAAGAGGCTGTTTCCTT
TTTCAAAAAATGTATGCATGGATACCTCAATTTGTTAGATGTGATCTGGTTATTATGAATATTC
AGATGATGTTGTCCTAGCCAAAGAAAATCTTGTGGAATGAGAAATCTTTTATACTACTTAGTTG
TTACACACTATTTCTAGTGCATTGGATTGTATATGCAGCCAGTGACGATTTTAGATTGCCCTAT
AGTGTAGAATCGATGTAGGCTCTTTTGTCTTTGGAAAAGATGTAGTTGACAAAATGGGGGAAAA
TAAATTGGGATTACCTGCTGTATGAACTGGAGTCTGACCCATTTCTAAAAGAATGGAAGAAAAT
TATTCGTGTTCATGAAATCACACCATTTCCTTTGAGAAAGAATGAAAGAATACAAGGGCATATG
AAAAAGCCACGCCAAAACACCTCAACTAACAGAATGGGGACCAACTAAGTAAAATGTTACGAAT
GGAGTAATTATAGAAAAGCTTCGAAATCGTGTTTTTGACCCAATAATGGTTGCAATAAGGGTAT
ATGCAGATGTTGAAGAAGATGCTTTTGATGATTTCTTGTATTATTGACATTTGGCAAATTCGGG
TATAGAATTAACAAATGACTTCTTAGGCGAACCATGAATGAATTGAGTTTGTGATTAAACCACA
TTAGTTATCACTGTGAGTTCTTGTTCTTTAATAGGTTAATAATGAATGTAAAACTGCGAAAGTT
AGTCTAAACCTACGAAACCAAACCCTAATGACTGCACAACTTTTGAAAATCAGATACGAATGGA
GTTCTTAATAAAACATGATTATTTTCCCATCTGACTTCAAACATGAGCCAATGATGGACAAAAT
AGCCACAATAAGCAGGCTTGGAGCAGAAAGAAAGAGCAAGCCTCAAAACTAGAAAGTTTTTGGC
TAGGAATGTGCCCTCATATGTCAGGCAGGTGGGACGACAGCTAAAACTTCTAGCAGCAGGTGTG
AGTTATCTGTTAGTGATTTTTCAGGCAAAATTTTATTGGCAAATGGGATGCCTTTTGGTCTAGG
CAGCAATGAAAGGCTACTCCAGTAATAGACCTTGGAGGCAGCTGGGGTTACAGCGATTGATTTT
GATGATGACAATGCTGCAGAAAACCCAAGGTAAAAAATCAAACCCCCAAGAAGGTGTTCCAAAC
TTCAATCTCTAAGGTGGTGTTTCGGGTAAGGAATGGAATAGTGAGGTGTAAGGAGTTTTGAAGT
TTAGGAAGTTGTGAATTCTTGGGACCATATTGAAAGGAAGTTTAGGAATGGAATAGCGGTGACA
ATGGTGCTAAAATCGATGACTATCTCCTCTGTTTGAGTTCCATCGCGTCCTGCTCTGATACCAT
ATTGAAAGTAGAGACAAAAAACACACAGATGTATGTGGAAACCCTAGTACAAGGAGAAATACCA
CGGTGCTGAAGATTTTTTTATTTTCCAACAATTCATAGAGGTACAAAGGGGGAAAGTATTTATA
GGCAACACAAGCCTAGATGTATGTGGAAACCCTAGTACAAGGAGAAATACCACGGTGCTGAAGA
TTTTTTTATTTTCCAACAATTCATAGAGGTACAAAGGGGGAAAGTATTTATAGGCAACACAAGC
CTAAAGAAAAGAATAAAAATTAGGGCAAAGTAAATCTTAACTATCCATGGGCTTTCATCATGAC
CTAAGCCCATTGTTTCTAACACTCCTCTTGGGAACATCAATAACTAGCTCTAATACTATTGTTG
TTACTTAAGAACCTTTGAAAACCACACCTCTAAAGTTAGCTATTGAGGTGGAAGAGCCGAGCCA
CTCAAGTCTGCCACACTGGTCATCCCATTCTAATCGACATGGGACAAAGGTAACCTATACCATC
TTGGTTTCTAATATTACCCCATCTTTGGAAAGCTTACGTCTCCACTGCTAGACCGACGATACTT
CATTGGAAACATCTAGTCAGAACCTTTTGTTGGTGCTCCACTTTAGAACGTCGGTAACCGTCTT
TGATACCATTGTTAGGTATTTAAGCACTTTGGGGGACCACCCTAAAAGCTAGCTATTGAGGTGG
GAGAGTCAAAGCACTTAAGTATCACATTGATCATTTCATTCTAATTGAAGTGAACAAAGGCAGT
CCGTACTACCTTGGTTTCCAATAGTTTTTCGATCAATTTCATGATTGTTGACAATTTATTAATC
CATCATCTTGTTTCAATACTCTTGTTGAACCAAAGGAGTAACATCTTGAATTCAGTTTGTGAAT
CACGTTTTTTGCAAATACCCATCAATTGCATGTCGATGTTGCAAGTTATGTAGGAAAAAAACAG
AAAGCTTTCCTGGTTTGTCTTACTATTATTGTTATGTTGTAAACAGGTACCAAATTCCAGATGA
TTGGCCTTATAAAGAGGCTCGACAGCTTTTCAAAGAACCACTAGTATGTACTGACGAAGAGCAA
CTTGACATTAAGTGGACTACTCCAGACGAAGAAGTAACTTTGTTTCTGATTTAAAAGGCTTTTC
CCAACTGTATTTTTCCTTCATTTTATATACTTGTGCACACACCCAACCGCCAACATATGATATC
AAAGCTTCAATCTCTCCTAGGGACCACATACATTTTATGATATTAAAGTTATTATCTCACATCT
ATTACAGGGCTTATTAACATTTTTGGTGAATGAGAATGGGTTCAACAGTGAGAGAGTGACAAAG
GTTTATCCTCCTAATAATATCAATTGTTGTCATACAGTTTGTGTATGAAAGCCAGAATAATTTT
TCATGAAAATTTATGCCTCATCAGTTTTTTGTTCTTTCATCAGGCAGTAGAAAAAATTAAAGCA
GCCAAGAACAAGTCATCACAGGGCCGGTATGTGTTTACTGTTCCATTTCATTTATTCTTGAAAG
GATAAACATTCTCCATCTATTTGGCAAATCCTGCTTTTTATTCCTCCTTAGTTATGAGCTATTC
TTTTTTACATATAATTTTTTAGTTAATTAGTAGGGTTTTTAAACATTGTAGTATTGGTTATTTT
TTTCACAATATCTTTTATCATTCAATTTTTTTCCTGTACAATTTTTCAGGATGGAGTCATTTTT
CAAGCCTGTTACTAATCCTTCAGTATCCATTAAACGAAAG
Conservation Information
Conserved circRNAs NA
PMCS 0.093885123
Functional Information
Coding potential Y
Potential coding position 20537683-20541598(+)
Potential amino acid sequence MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGG
LTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGL
LTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVYAVASEDMDSLT
FGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALK
LIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLV
NENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVYAVASEDMDSLTFGSPR
FLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQH
GSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGF
NSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVYAVASEDMDSLTFGSPRFLRHL
MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIES
ILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERV
TKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRK
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description responsive to salt stress in root
Other Information
References He et al., 2020