Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Csa1G561390_circ_g.1 |
| ID in PlantcircBase | csa_circ_000467 |
| Alias | Chr1:20537658_20541601 |
| Organism | Cucumis sativus |
| Position | chrChr1: 20537658-20541601 JBrowse» |
| Reference genome | Cucumis sativus v1.5 |
| Type | e-circRNA |
| Identification method | Find_circ |
| Parent gene | Csa1G561390 |
| Parent gene annotation | NA |
| Parent gene strand | + |
| Alternative splicing | Csa1G561390_circ_g.2 Csa1G561390_circ_g.3 |
| Support reads | NA |
| Tissues | leaf |
| Exon boundary | Yes-Yes |
| Splicing signals | GT-AG |
| Number of exons covered | Csa1G561390.1:7 Csa1G561390.3:7 Csa1G561390.2:7 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 0.093885123 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
20537683-20541598(+) |
| Potential amino acid sequence |
MDSLTFGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGG LTALKLIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGL LTFLVNENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVYAVASEDMDSLT FGSPRFLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALK LIRQHGSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLV NENGFNSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVYAVASEDMDSLTFGSPR FLRHLMDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQH GSIESILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGF NSERVTKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRKVYAVASEDMDSLTFGSPRFLRHL MDPSSRKIPVMEFEVAKILEELNLTMDQFIDLCILSGCDYCDNIRGIGGLTALKLIRQHGSIES ILENINKERYQIPDDWPYKEARQLFKEPLVCTDEEQLDIKWTTPDEEGLLTFLVNENGFNSERV TKAVEKIKAAKNKSSQGRMESFFKPVTNPSVSIKRK |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | responsive to salt stress in root |
| Other Information | |
|---|---|
| References | He et al., 2020 |