Detail information of Os06g0155600_circ_g.1


General Information
CircRNA Name Os06g0155600_circ_g.1
ID in PlantcircBase osa_circ_042262
Alias NA
Organism Oryza sativa
Position chr6: 2864383-2864687  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method CIRI-long
Parent gene Os06g0155600
Parent gene annotation ATPase, AAA-type, core domain containing protein. (Os06t0155600-
01)
Parent gene strand +
Alternative splicing NA
Support reads NA
Tissues leaf
Exon boundary   No-No
Splicing signals   GT-AG
Number of exons covered Os06t0155600-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGTGGAAAACCACATGCCCCAGGCAATAGTCATCGATGAAATTGGAACGAAGCTAGAGGCTATG
GCTGCTAGCACCATTGCACAACGGGGGATACAACTTatggagatattcctcacccaggaatagg
caatgcccgcaggttacaagtgcctaaccaagatatgcagcataaggtccgtgatcgtatatat
gccaaacc
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 188
Transcript exons: 2864383-2864456,2864574-2864687
ATGGAGATATTCCTCACCCAGGAATAGGCAATGCCCGCAGGTTACAAGTGCCTAACCAAGATAT
GCAGCATAAGGTATTGATAGAAGCTGTGGAAAACCACATGCCCCAGGCAATAGTCATCGATGAA
ATTGGAACGAAGCTAGAGGCTATGGCTGCTAGCACCATTGCACAACGGGGGATACAACTT

Genomic sequence ATGGAGATATTCCTCACCCAGGAATAGGCAATGCCCGCAGGTTACAAGTGCCTAACCAAGATAT
GCAGCATAAGGTCCGTGATCGTATATATGCCAAACCAATTACATGTGAATTGATAATTGAAGCT
CTTTTTAACACACCAATGTCTATTTGTGCTTATTTGTTTTTTTTTTCTCTCAATCTCAATCAGG
TATTGATAGAAGCTGTGGAAAACCACATGCCCCAGGCAATAGTCATCGATGAAATTGGAACGAA
GCTAGAGGCTATGGCTGCTAGCACCATTGCACAACGGGGGATACAACTT
Conservation Information
Conserved circRNAs NA
PMCS 0.232085847
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References this study