Detail information of AT2G04650_circ_g.2


General Information
CircRNA Name AT2G04650_circ_g.2
ID in PlantcircBase ath_circ_012801
Alias Ath_circ_FC1165
Organism Arabidpsis thaliana
Position chr2: 1623869-1624044  JBrowse»
Reference genome TAIR10.38
Type   ei-circRNA
Identification method find_circ
Parent gene AT2G04650
Parent gene annotation ADP-glucose pyrophosphorylase family protein
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-CA
Number of exons covered AT2G04650.2:1
AT2G04650.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATATAATATGATCAATCATCATTACAAAGTTGAGAACTTTCCCATCCTTTGAGCCTGAAGAAAC
TATGAAAAGTTCAAAACTTTGACAcatacaaagcaaattctcgttcctcgtaaaatccaatcag
aaaaatctgagccagatttgatatctgtccatgccaaatacaaaacaa
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATACAAAGCAAATTCTCGTTCCTCGTAAAATCCAATCAGAAAAATCTGAGCCAGATTTGATAT
CTGTCCATGCCAAATACAAAACAAATATAATATGATCAATCATCATTACAAAGTTGAGAACTTT
CCCATCCTTTGAGCCTGAAGAAACTATGAAAAGTTCAAAACTTTGACA
Conservation Information
Conserved circRNAs NA
PMCS 0.231531448
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a