Detailed infomation of each circRNA
| General Information | |
|---|---|
| CircRNA Name | Csa2G075460_circ_g.1 |
| ID in PlantcircBase | csa_circ_000902 |
| Alias | Chr2:6238622_6240027 |
| Organism | Cucumis sativus |
| Position | chrChr2: 6238622-6240027 JBrowse» |
| Reference genome | Cucumis sativus v1.5 |
| Type | e-circRNA |
| Identification method | CIRI2;Find_circ |
| Parent gene | Csa2G075460 |
| Parent gene annotation | NA |
| Parent gene strand | - |
| Alternative splicing | Csa2G075460_circ_g.3 |
| Support reads | NA |
| Tissues | leaf,root |
| Exon boundary | Yes-Yes |
| Splicing signals | CT-AC |
| Number of exons covered | Csa2G075460.1:2 |
| Conservation Information | |
|---|---|
| Conserved circRNAs | NA |
| PMCS | 1.307136255 |
| Functional Information | |
|---|---|
| Coding potential | Y |
| Potential coding position |
6240017-6238624(-) 6238637-6239969(-) |
| Potential amino acid sequence |
MVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSDQLQGQSGIVKRAVALGRYLQNPLAMVA TLCGPGREILSWKLNPLENFLTPDEKYGMVEQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGL GPRKAASLQRSLVRAGSIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTR IHPESYALAQELAKDVFDEDVKGDANDDEDAEMAIEHVRDRPHLLRTLDVDEYAKSKKREDKIE TFLDIKRELMQGFQDWRKQYEEPSQDEEFYMISGETEDTLAEGRIVQATVRKVLGQKAICGLES GLTGMLMKEDYADDSRDISDLSDRLREGDIVTCKIKSIQKNRYQVFLVCKESEMRSNRHQITQN LDPYYHEDRSSLQSEQEKSRKEKELAKKHFKPRMIVHPRFQNITADEAMEIIFKMVEENPRDVG HEMDGLSIVYGDESLPRLYENSRISSDQLQGQSGIVKRAVALGRYLQNPLAMVATLCGPGREIL SWKLNPLENFLTPDEKYGMVEQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGLGPRKAASLQR SLVRAGSIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQ ELAKDVFDEDVKGDANDDEDAEMAIEHVRDRPHLLRTLDVDEYAKSKKREDKIETFLDIKRELM QGFQDWRKQYEEPSQDEEFYMISGETEDTLAEGRIVQATVRKVLGQKAICGLESGLTGMLMKED YADDSRDISDLSDRLREGDIVTCKIKSIQKNRYQVFLVCKESEMRSNRHQITQNLDPYYHEDRS SLQSEQEKSRKEKELAKKHFKPRMIVHPRFQNITADEAMEIIFKMVEENPRDVGHEMDGLSIVY GDESLPRLYENSRISSDQLQGQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPLENF LTPDEKYGMVEQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGLGPRKAASLQRSLVRAGSIFT RKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQELAKDVFDED VKGDANDDEDAEMAIEHVRDRPHLLRTLDVDEYAKSKKREDKIETFLDIKRELMQGFQDWRKQY EEPSQDEEFYMISGETEDTLAEGRIVQATVRKVLGQKAICGLESGLTGMLMKEDYADDSRDISD LSDRLREGDIVTCKIKSIQKNRYQVFLVCKESEMRSNRHQITQNLDPYYHEDRSSLQSEQEKSR KEKELAKKHFKPRMIVHPRFQNITADEAMEIIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYE NSRISSDQLQGQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPLENFLTPDEKYGMV EQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGLGPRKAASLQRSLVRAGSIFTRKDFVTAHGL GKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQELAKDVFDEDVKGDANDDED AEMAIEHVRDRPHLLRTLDVDEYAKSKKREDKIETFLDIKRELMQGFQDWRKQYEEPSQDEEFY MISGETEDTLAEGRIVQATVRKVLGQKAICGLESGLTGMLMKEDYADDSRDISDLSDRLREGDI VTCKIKSIQKNRYQVFLVCKESEMRSNRHQITQNLDPYYHEDRSSLQSEQEKSRKEKELAKKHF KPRMIVHPRFQNITADEAME MKQWRLFLRWWRRILETLDMRWMD* |
| Sponge-miRNAs | NA |
| circRNA-miRNA-mRNA network | VISUALIZATION |
| Potential function description | NA |
| Other Information | |
|---|---|
| References | Zhu et al., 2019;He et al., 2020 |