Detail information of Csa2G075460_circ_g.1


General Information
CircRNA Name Csa2G075460_circ_g.1
ID in PlantcircBase csa_circ_000902
Alias Chr2:6238622_6240027
Organism Cucumis sativus
Position chrChr2: 6238622-6240027  JBrowse»
Reference genome Cucumis sativus v1.5
Type   e-circRNA
Identification method CIRI2;Find_circ
Parent gene Csa2G075460
Parent gene annotation NA
Parent gene strand -
Alternative splicing Csa2G075460_circ_g.3
Support reads NA
Tissues leaf,root
Exon boundary   Yes-Yes
Splicing signals   CT-AC
Number of exons covered Csa2G075460.1:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   CATAGAGACGAGGAAGGGACTCATCGCCGTATACAATGCTTAATCCATCCATCTCATGTCCAAC
GTCTCTAGGATTCTCCTCCACCATCTTAAAAATAATctccattgcttcatctgctgttatattc
tggaatcgagggtgaacaatcattcttggcttgaaatgcttttttgcaagttccttctcttttc
gagacttt
Assembled circRNA sequence   Yes
Full-length trsnacripts Transcript length: 1314
Transcript exons: 6238622-6239793,6239886-6240027
CTCCATTGCTTCATCTGCTGTTATATTCTGGAATCGAGGGTGAACAATCATTCTTGGCTTGAAA
TGCTTTTTTGCAAGTTCCTTCTCTTTTCGAGACTTTTCTTGCTCACTCTGTAGGCTGCTTCGAT
CTTCATGATAGTAAGGATCAAGATTCTGAGTAATCTGGTGCCGGTTACTTCTCATCTCACTCTC
CTTACAAACAAGGAAAACCTGGTACCTATTCTTCTGAATTGATTTGATCTTGCAAGTAACGATG
TCCCCCTCACGCAACCTGTCAGACAAATCAGAGATATCTCTAGAATCATCTGCATAATCTTCTT
TCATAAGCATCCCAGTCAATCCAGATTCAAGTCCACAAATTGCTTTTTGACCTAGCACCTTGCG
GACTGTAGCCTGCACAATTCTCCCCTCCGCAAGGGTGTCCTCAGTTTCACCAGATATCATGTAA
AACTCTTCATCCTGACTGGGCTCTTCATATTGCTTACGCCAATCCTGAAAACCCTGCATCAGTT
CCCTTTTTATGTCAAGAAAAGTCTCTATTTTATCTTCTCGTTTCTTGCTCTTGGCATATTCATC
AACATCAAGAGTCCTTAGTAAATGAGGCCGGTCTCTAACATGCTCTATGGCCATCTCTGCATCC
TCATCGTCATTTGCATCACCTTTAACATCTTCATCAAAAACATCTTTTGCTAACTCTTGTGCCA
GAGCATATGATTCTGGGTGAATTCTCGTATCATCCAACAAATCTATAAATTGGCTACTGCTTGC
AGCCAACCCACTCCGCCTAACACGCAAGAACCCAACTGCATTAACAAATACTTTTTTACCAAGG
CCATGTGCTGTAACGAAGTCCTTCCGTGTGAAAATTGATCCAGCCCTCACCAAGGATCTCTGTA
AAGAAGCTGCCTTCCTTGGTCCTAGACCAGCTATGAATTGCAATGGGCTGAACAACCATTCATG
GCTTATAGCCAAATTAGTATCCAGGCCAACCTGGTTTGTCACATCCACCATGACCTGTTCAACC
ATCCCATATTTTTCATCCGGGGTCAAAAAATTCTCCAAAGGATTTAGTTTCCAAGATAAAATCT
CCCTTCCTGGACCACAAAGTGTCGCAACCATAGCTAGTGGATTTTGCAGATAACGTCCAAGAGC
AACAGCACGCTTCACAATGCCTGATTGCCCTTGCAATTGGTCAGAGGAAATCCTAGAATTTTCA
TAGAGACGAGGAAGGGACTCATCGCCGTATACAATGCTTAATCCATCCATCTCATGTCCAACGT
CTCTAGGATTCTCCTCCACCATCTTAAAAATAAT

Genomic sequence CTCCATTGCTTCATCTGCTGTTATATTCTGGAATCGAGGGTGAACAATCATTCTTGGCTTGAAA
TGCTTTTTTGCAAGTTCCTTCTCTTTTCGAGACTTTTCTTGCTCACTCTGTAGGCTGCTTCGAT
CTTCATGATAGTAAGGATCAAGATTCTGAGTAATCTGGTGCCGGTTACTTCTCATCTCACTCTC
CTTACAAACAAGGAAAACCTGGTACCTATTCTTCTGAATTGATTTGATCTTGCAAGTAACGATG
TCCCCCTCACGCAACCTGTCAGACAAATCAGAGATATCTCTAGAATCATCTGCATAATCTTCTT
TCATAAGCATCCCAGTCAATCCAGATTCAAGTCCACAAATTGCTTTTTGACCTAGCACCTTGCG
GACTGTAGCCTGCACAATTCTCCCCTCCGCAAGGGTGTCCTCAGTTTCACCAGATATCATGTAA
AACTCTTCATCCTGACTGGGCTCTTCATATTGCTTACGCCAATCCTGAAAACCCTGCATCAGTT
CCCTTTTTATGTCAAGAAAAGTCTCTATTTTATCTTCTCGTTTCTTGCTCTTGGCATATTCATC
AACATCAAGAGTCCTTAGTAAATGAGGCCGGTCTCTAACATGCTCTATGGCCATCTCTGCATCC
TCATCGTCATTTGCATCACCTTTAACATCTTCATCAAAAACATCTTTTGCTAACTCTTGTGCCA
GAGCATATGATTCTGGGTGAATTCTCGTATCATCCAACAAATCTATAAATTGGCTACTGCTTGC
AGCCAACCCACTCCGCCTAACACGCAAGAACCCAACTGCATTAACAAATACTTTTTTACCAAGG
CCATGTGCTGTAACGAAGTCCTTCCGTGTGAAAATTGATCCAGCCCTCACCAAGGATCTCTGTA
AAGAAGCTGCCTTCCTTGGTCCTAGACCAGCTATGAATTGCAATGGGCTGAACAACCATTCATG
GCTTATAGCCAAATTAGTATCCAGGCCAACCTGGTTTGTCACATCCACCATGACCTGTTCAACC
ATCCCATATTTTTCATCCGGGGTCAAAAAATTCTCCAAAGGATTTAGTTTCCAAGATAAAATCT
CCCTTCCTGGACCACAAAGTGTCGCAACCATAGCTAGTGGATTTTGCAGATAACGTCCAAGAGC
AACAGCACGCTTCACAATGCCTAACAAGAAAATAAATTTATAAACAATAAAATAGGAGTTTAAA
AGCAAAACAACAATACAATGCATAACAAAAAGGTCAATGTACGAGTACCTGATTGCCCTTGCAA
TTGGTCAGAGGAAATCCTAGAATTTTCATAGAGACGAGGAAGGGACTCATCGCCGTATACAATG
CTTAATCCATCCATCTCATGTCCAACGTCTCTAGGATTCTCCTCCACCATCTTAAAAATAAT
Conservation Information
Conserved circRNAs NA
PMCS 1.307136255
Functional Information
Coding potential Y
Potential coding position 6240017-6238624(-)
6238637-6239969(-)
Potential amino acid sequence MVEENPRDVGHEMDGLSIVYGDESLPRLYENSRISSDQLQGQSGIVKRAVALGRYLQNPLAMVA
TLCGPGREILSWKLNPLENFLTPDEKYGMVEQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGL
GPRKAASLQRSLVRAGSIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTR
IHPESYALAQELAKDVFDEDVKGDANDDEDAEMAIEHVRDRPHLLRTLDVDEYAKSKKREDKIE
TFLDIKRELMQGFQDWRKQYEEPSQDEEFYMISGETEDTLAEGRIVQATVRKVLGQKAICGLES
GLTGMLMKEDYADDSRDISDLSDRLREGDIVTCKIKSIQKNRYQVFLVCKESEMRSNRHQITQN
LDPYYHEDRSSLQSEQEKSRKEKELAKKHFKPRMIVHPRFQNITADEAMEIIFKMVEENPRDVG
HEMDGLSIVYGDESLPRLYENSRISSDQLQGQSGIVKRAVALGRYLQNPLAMVATLCGPGREIL
SWKLNPLENFLTPDEKYGMVEQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGLGPRKAASLQR
SLVRAGSIFTRKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQ
ELAKDVFDEDVKGDANDDEDAEMAIEHVRDRPHLLRTLDVDEYAKSKKREDKIETFLDIKRELM
QGFQDWRKQYEEPSQDEEFYMISGETEDTLAEGRIVQATVRKVLGQKAICGLESGLTGMLMKED
YADDSRDISDLSDRLREGDIVTCKIKSIQKNRYQVFLVCKESEMRSNRHQITQNLDPYYHEDRS
SLQSEQEKSRKEKELAKKHFKPRMIVHPRFQNITADEAMEIIFKMVEENPRDVGHEMDGLSIVY
GDESLPRLYENSRISSDQLQGQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPLENF
LTPDEKYGMVEQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGLGPRKAASLQRSLVRAGSIFT
RKDFVTAHGLGKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQELAKDVFDED
VKGDANDDEDAEMAIEHVRDRPHLLRTLDVDEYAKSKKREDKIETFLDIKRELMQGFQDWRKQY
EEPSQDEEFYMISGETEDTLAEGRIVQATVRKVLGQKAICGLESGLTGMLMKEDYADDSRDISD
LSDRLREGDIVTCKIKSIQKNRYQVFLVCKESEMRSNRHQITQNLDPYYHEDRSSLQSEQEKSR
KEKELAKKHFKPRMIVHPRFQNITADEAMEIIFKMVEENPRDVGHEMDGLSIVYGDESLPRLYE
NSRISSDQLQGQSGIVKRAVALGRYLQNPLAMVATLCGPGREILSWKLNPLENFLTPDEKYGMV
EQVMVDVTNQVGLDTNLAISHEWLFSPLQFIAGLGPRKAASLQRSLVRAGSIFTRKDFVTAHGL
GKKVFVNAVGFLRVRRSGLAASSSQFIDLLDDTRIHPESYALAQELAKDVFDEDVKGDANDDED
AEMAIEHVRDRPHLLRTLDVDEYAKSKKREDKIETFLDIKRELMQGFQDWRKQYEEPSQDEEFY
MISGETEDTLAEGRIVQATVRKVLGQKAICGLESGLTGMLMKEDYADDSRDISDLSDRLREGDI
VTCKIKSIQKNRYQVFLVCKESEMRSNRHQITQNLDPYYHEDRSSLQSEQEKSRKEKELAKKHF
KPRMIVHPRFQNITADEAME
MKQWRLFLRWWRRILETLDMRWMD*
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhu et al., 2019;He et al., 2020