Detail information of Os04g0584600_circ_g.10


General Information
CircRNA Name Os04g0584600_circ_g.10
ID in PlantcircBase osa_circ_025006
Alias NA
Organism Oryza sativa
Position chr4: 29534858-29535258  JBrowse»
Reference genome IRGSP-1.0.38
Type   i-circRNA
Identification method CIRCexplorer
Parent gene Os04g0584600
Parent gene annotation Similar to Calcium dependent protein kinase. (Os04t0584600-01);S
imilar to Calcium-dependent protein kinase. (Os04t0584600-02);Si
milar to cDNA clone:001-041-E12, full insert sequence. (Os04t058
4600-03)
Parent gene strand +
Alternative splicing NA
Support reads 1
Tissues root
Exon boundary   No-No
Splicing signals   TG-AT
Number of exons covered 0
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCTTCAATAACCAGCAGAATTCATTTTGTTACTTCATTAATGAATGTTTATGGTTATGTTAGTA
GCAAAAAGAAGTTAGTGCCATGACTTGTTTGCCTAAgtaagtatagtgttgatacctcctgatg
tgctatataactatgttatatattattctggtatagctgggatgtgtacaaaaatgaatgtgca
agcagcgg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTAAGTATAGTGTTGATACCTCCTGATGTGCTATATAACTATGTTATATATTATTCTGGTATAG
CTGGGATGTGTACAAAAATGAATGTGCAAGCAGCGGATGCAATAAAGTTTGTTCAATTAGTTAA
GACAATTAAAGGCTTTGCATTGGATTGTTTAGTATTGAGGTGGAAAACCAACCATAGTACCTGA
ACTACCTAGGTCTTGAAACTCTTTCAATCCATTATTGGGATCACATATGCTCTAGTAGGTGGTT
AGCTGTCCAGTCATGTGCTTTACTTAACAAAGGCCTAGGGACTTCTCTTCAATAACCAGCAGAA
TTCATTTTGTTACTTCATTAATGAATGTTTATGGTTATGTTAGTAGCAAAAAGAAGTTAGTGCC
ATGACTTGTTTGCCTAA
Conservation Information
Conserved circRNAs osi_circ_014708
PMCS 0.118661679
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017