Detail information of GLYMA_18G146600_circ_g.1


General Information
CircRNA Name GLYMA_18G146600_circ_g.1
ID in PlantcircBase gma_circ_004720
Alias Gm18circRNA2463
Organism Glycine max
Position chr18: 24807544-24812425  JBrowse»
Reference genome v2.0.38
Type   ei-circRNA
Identification method Tophat, CIRI
Parent gene GLYMA_18G146600
Parent gene annotation hypothetical protein
Parent gene strand -
Alternative splicing GLYMA_18G146600_circ_g.2 GLYMA_18G146600_circ_g.3
Support reads NA
Tissues root, stem
Exon boundary   No-No
Splicing signals   TC-CA
Number of exons covered KRG99459:7
KRG99460:7
Experimental Information
Sanger sequencing for BSS   Yes
PCR primers for BSS    F: GCACTCAACTGGCAAAACCT
R: GCTGAAGATGCAGCACAAGT
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TAATCTGGTATGTAGTGAAACCCTCCTACCTTAGGTGATCCAGCTGTAGATGCTTTCTGAGTTA
ATCTGTCAAACAATTTCTCATTCTCTTCATGCAACCcctttcttcttttatgatcaactgattc
tagagctgagcgtagcttcgctacttgtgctgcatcttcagcctcctctgtcgccaaggtacca
gcaatatc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTTCTTCTTTTATGATCAACTGATTCTAGAGCTGAGCGTAGCTTCGCTACTTGTGCTGCATC
TTCAGCCTCCTCTGTCGCCAAGGTACCAGCAATATCCTGACAATCAAATGGCAGAAAACAGAAG
CCTGACACATTATCTAAGGAGCACATTATCTAAGGAGCACAATAACAGATCATGCTCTCATACA
AGGGAAATCAATTAAAAAGGATTCATTCATTTCTTTTGGTCCAAGGTATACATCCACAGCACAC
AATCTAATCAAACAAATCACATAAATCTAACTTTCTCTAAGAATGTAGGTTTGGTCCCTAACTC
AACCCCAAAATCTAGCTCAAATAGGATGAGGATTTCCTCTCACTTATATACTCTATCTTGGCCT
TATCTCTAGCAGATGTGGGACTTGATTTTTCCAACACACCCCCTCATGCCCAAACATTTTTTGG
GCTTGGTGCATGGATAATATGGTGGGTGGCCCGCTAAATGGATCTTAGGCTCTAAACCATCTTA
GAATGTGAGTTTGGGCCTAACTCAACTCCAAAAGTTAGCTCGCAGGGCGAGGGTTGCCTCCCAC
ATATATACTTTATTTTGGCCTTATCTTTAGCTGATGTGGGACTTGAGTTTTTCCAACGCTATCC
TAGAAGGTAATGAAGGTATGCATCTAAATATATGTTAGTTAATTTGAATGTCTGAATTCAAAAT
GCATTTAAAAAGTTAGGGAAAATAATATAGTGAAACTCTAAGCAGCACTCTGTCTTTGTTTTCT
TTTTGGTGGAAGCACTATTTTTCTTTTGGGGCTAACAATGGACCTAGATCTAGAATTAAGTATA
AGAGAAGGTTAAAGAACAAATTTTAAGTTTAAACTAGATTGATAGATAATATCCACCAAAGACG
ATACAGTGTGACCATTGTCTAAATATCATAAAGAAGCTATGAAAAGTAGCTCATCCAATCAAAT
ATGCCAAAATAAGTAGCTGGACTCAGTCTATTATGTTTAGACTATTGTAATATTTGAATGCAAT
GAATTGTATGAGTATCATCTCTCAACAAAGTCCTAAAGTAAACAAGGCTTCTTCCAATAATCAA
GAACTTCCGAGGTATGCATTTAGAAGTCATGCAACACAGAAGTAACTAGAGGCATACCTTTAAG
TGTTGTAGTTGAGAAGTATAGACACGTTTTGAATATTCAAAGAAAAGCTGGCCAAGGGCATCAG
TGTGGGGAGGCAGAGCAGCACCAAGTCCGGCCATCCAACCATCCATAATTGCAGTGGAAAGAAG
TTCCAACTGACCAGTAGACCCCCCCGATGCATCTTCTCCCGTTAAAGATAGAAACTCAAAATTC
TCTGCAAGCCAGGATCTAATTTGACGCTGCAGCTCACCCGCTGGTGTATGTACAAAGAGTGCAG
CAAGAGCCCTGTTCCCAATTGCAAAACTTTTGGCCTCCTCAGTAATTTCCCTGAGCTTTCCACC
AGTTACTTGCTGTCTCCAAATGTCCTATGCACAGTTTATTTCAAAATGCAAAAAGAATAAGTAA
AAATGAAGTATCTACATGTGACCTAGGTTAAAACAATGAGAGAAAAAAAACTCTGGTATGTGCC
ACAAAAGAAACAACACAAAAGCAGCACAAAAACTAAAAGAATAAATGGCATGTCTTTGTGGAAA
ATTTGAAGTTTAAGAAATGTTTACTTTCTCAGCCTTCATTTCTCAACCAGTTATCAGTCATTTA
GCAGATAACATAAGATAGGGACACCAAGAAATGGTCAAAAAAAGGCATTTATAATGTTCAAAGA
TCTAAAAGTCACAGGAGAAACTACAATTTCCCTCCCCAACAGTTTTCTACACCTTAACTGAGCT
TTTCTGTTTGTTAGTGTGTACAGAAATAAGAATATATATAATAGATTAATAAGTATTAGCAGCT
ACCTCATCAATACCACGTATCTTCAACACAACAGATGAAAATTTGGATTTCTTTTCTGGTTTTA
GATTTACTTTAAATCCCTGGATCTGCTCATCAACATATAACACAGGAGACCTACCAGGACTACT
CCCTCGGCTGGAACTTCTACTGCGCCCAGTATTAGTCTTCTCAAGAAAGCACTCAACTGGCAAA
ACCTTCAAATTCAATGTGCAATACATACAAAATCAACAAAATGAACACCACTAGACTCTATAAA
ACATTCCAAAAATACACAGTGAAAACCTTATTAGAATTTATTTTCTTTTGAAAGAGAAATCCAA
TAGCCTCTACTGTTCTTACCTTAATTGATTGCAACTCTGGGGATCTAGCAAGCAAAGATCTTAT
ATACAGAATTCTAACACGGGAAACAAGCATGGTGTCCATTACTCGTTTTGGTTCCATCTTTCTA
ATAAAAGAGAAAACAGAATCCTTAATTTCAGCGAGTATCTCATGTTCTCTAGAGGCACCAGCTT
TAATGACAGCAGCCAGAACCTGCAACCAATTTAAAATATGCTCTTTAAATTGGTGCAGACATTT
CATTGATATGCAGAACAATCAACCTAATTTGTTATGGATAAAATTGTAAGTACAACCTCTTTTG
ATGCTAAGTACATGATTATTTCAAGTTGTTATAGAATGGGAGCAATTCCAGCTGTAAATATTAT
CTTAGTAAATGTAGAAATTAGAATAGCACAATTATAGAGATCAGCAGTTAGCATTATAAACACA
CAAGATTATATATATCATGTACAGTGCTTAAGAATAAAACATTCATTTTCCAGCATGTTCCCTG
CCATTGTTAACAGTTTCTGTTAATATGGTATCAAGAGTTGGTCAAAATTTTCCCTGATTTTTTG
GGTGAACTTAGGTCCCACCGTCTCACTGCCCATAATAAGAGGTTCAGAATCCTAATACTCTAGC
AGTCAGGCAGCAGTGTGCTGGTATCACAGGCTTCTCACCAGGTTTCACTCCTCTCTCATGTCAG
CATGTGACAGTGCAAGGAGCCAGTTGTCCTCGGGTTTCCTTTCCTGGCAATGCTTTGCCATTTC
TAGTATATTTCTCTGGTGTCTTGACTCTCTTTATAAACCACTCAAACTAGAATCCCCACTTTCA
ATGTGGGCCTCATGTCCCATACCTTCCAAAGTTGCAATTGGATCTTAACATCCCTCCATGATCC
ACACTCCACAGCCCCAACATATATGCAAGTTGGTCATGCACTAGCACTTTGACTGGTCCTAAGC
AAATAATATAATGCCAGGCATCACCAACCATGCTGTTCACTTGTAGCTGAGAGCCTGAGGCATG
GTGAAAAGCTATATACCAACTGATAAGACACTTGGGGTTTATGTGGGTGCACAAAAGGCATACA
TTGAAACACAATGTCTCAGGTTCTTATCAATTGTTATCAATTGGTAAATCATTTAGTATCCATC
AAATTTGTGTCATGAAGGGATTTATGAGGGCGCTTGAAGGTTTAAGAATTTTATGGTTTTTTGC
AAGATTTGAGTGAAGGAATACATTAGAGCACAGGTCGATGAGGCTTAGGTCATGGGTCAGTGAG
GTTTAGAGGTGTGAGGATGAAGATTGAAATTTATGATTTTAATTATGAGGGAAGGCAAGCTTGA
ATAGGAATTTTAGACATTTTGCCCATAAATTATACAGCAGCTGACACTTTACAATCAACAAAGA
CAAGTGTTGTGTCCCATACATCAGGAGTGTCACAAGTGTAATGTGCTCTACCCCTGAGATGAGT
GTAATTTCCCTAAAGTTTTTTAATGCATCCAAGTTATTGAATTGTCCAGTGAGTAACTAGAAAG
AGGTTAGATGCATATGGAAATGTTCAATTTCACATATATGATCAGAATTTAGATATTCTTCCCA
GAAAGACTCAGCTTAACATAACTGAAAATAACATATAAGATAGCACAACTGCACATATTAGCTG
TTTTCAGTAAAATGAATCATAAATACATTCACGCATACCAGCATCAAAAGCTTGTTTGCACCAT
CAGATATGGCAGCATGCCCTTCATATTGATCTGGATCAAAGTCATTCAGGGCAGCAGTAAGATA
TTCACCAGCAGGGGTAGTCTTAACTATTTCAGAGCCAGTTTTAACTAGAGCAACCGTGCCATCA
TTTTTATCAGTGGCCAAAGGTGAAGGAAGAACACCCATAGAACGAGAACTTGTATTGTTGTTGG
TGCCATTCCTGTATCAAGCAACCAGAATATAGTCAATATTCAATAATCATATACTTGAAAAGAA
AACAAAACTTACAAGGAATAGAATAAATTGTACCTTCCAATATCCCGAGGCTGAACATTAGCTG
ATCCACGAGCTAATGGACTTGACAACTGAAAATAAGGCATGAATTTTATGGAGCCAGAAATGCC
CACACACAGCAAAGAAGCATGACTATTGATATAAATAATTGTTACATTACTGTTTGGATATGTT
ATTTGTGACATGTGGTATGTATATTAAAATACAACATGTTGCTGATTCCTGATTGATCAAAAGA
AAGCAAACAATGGTAGGAAAAAAGACATCTGTGGTTGCAGCCATGAAAATAGAAGCCAGTTTAT
GAATCAAAAGTTCTTCAAAATCAAACACTACTTATGGGTAAGATATAAACATTTGGTTTAGTGA
CACAACCACAGTCATCAAAAGAAAAGTATAACAGGGCCATATACAGTGTAACTTATATTTTAAA
AAAGGATCATAATTTGATATACAAACGTTAAAATAGTTAGTGTCAAATTTAAAAAGCTTGACAA
CAATTCTTCCCTTTATATACAACAGTTCATAGTGATAGTATACAGTTAATCTGGTATGTAGTGA
AACCCTCCTACCTTAGGTGATCCAGCTGTAGATGCTTTCTGAGTTAATCTGTCAAACAATTTCT
CATTCTCTTCATGCAACC
Conservation Information
Conserved circRNAs NA
PMCS 0.04136213
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhao et al., 2017a