Detail information of BGIOSGA014810_circ_ig.1


General Information
CircRNA Name BGIOSGA014810_circ_ig.1
ID in PlantcircBase osi_circ_014515
Alias Chr04:25212927_25216130(MH63RS2), Chr04:25212927_25216130(MH63RS2)
Organism Oryza sativa ssp. indica
Position chr4: 23269424-23272636  JBrowse»
Reference genome Oryza_indica.ASM465v1.42
Type   ig-circRNA
Identification method CIRI2, find_circ, find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing NA
Support reads NA
Tissues root, leaf, panicle
Exon boundary   NA-NA
Splicing signals   CT-GA
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TGATAGATGGCACGGATTACATGAGCTTAAAGACATTTGCTGCAGGCACAGCGAGAGGAAGATC
GATCAATACCGAAGCTAGGGAGAAGAGTGAAGTGATccttcaccttgcttctactttgtttgct
actatgaatcctccagtctctggtaaaaaggcaaactttttacaagtgcagtggttggttcaga
gtcggttt
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCTTCACCTTGCTTCTACTTTGTTTGCTACTATGAATCCTCCAGTCTCTGGTAAAAAGGCAAAC
TTTTTACAAGTGCAGTGGTTGGTTCAGAGTCGGTTTCATGGAAATCACTGTCAGGCTATCACTA
TGTTCAGAGGCTGGTCTTAGACAAGCAAAACTTAGTTTATGAGCTAAGGACTCAACTGCCTCAC
AGGTAACAATAATAGAAGGATATGTGACAAGACAAAGTCAAAGGTATCATGTGTCTCAGAACCC
TTTTTTCTTCCTGCAGAAACTATGTTCTAGAAAATTATCCCAAATAGGGAAAGAATTAAAATTC
CTCTTGATTAGGTCCCTAGTATTCTCTGTCTGGTGGCCTAGTATTCCCTGGCTGCCGTTCTTTA
CTCTCAAGGAGATGTGCTATCCTCCATCAATTTAAATACTGTTCAACTGTTCAGTTGCTAATTG
ACAAGTTTGTTCGTTTGCAATGCTGCCAGTTGGGACTTATCCGAAGGTTCCTGGCAAGGCAGAC
CAATTGATTAGAAGCGACCGGAATATGATAGGGAGCATAGGGCAAATGTATGTATGTATGTGTG
TGTGTGTGTGTGTGTATATATATATATATATATATATATATATATATATATATAATATATAATA
TATTGGTTCCTTAAATATCCAAGGTTACGTGACTTGTATTCCCCAGTTGAGCTAAAATTATTAA
ATAAACTATTGGGTCAAAGCAATAATATAATGGAACCCTTTATCTATCACCGATTCAACATTAG
AAACGTGTCGCTACTGGCTTCCATACACTTGTAGGACATCTCAGGAGCAAATGGTTTCAGACAC
TGTGTCCTGTGGGGCTCTGAACATTGTGCATATCAAGCACAGGGTGTGATAAAGAAAAAGGAAC
CAGGTAAAATCACTCAACAAGACAACAAGCCACCTTATTAGAAAAGCTAGCCCTATGAAAATAT
ACTGGCTATTCCATGTGCTCTAAAAAGAAGCTAATAGGTTACTGTGGTTTCTAACCATGTCATG
TACTCGGTTTATTTCACCTAGTATATATAACTAGCATGATCTATATCTATTGTCTATAGTTCCC
AGGACGTTATAACTTATAAGCGCCCCACCGTTTACCGTCGCCGGGAAATCTTTTGTGACTTGTG
AGACATATTTACACCGGCAGGATGCTACTACTTGCAAGGAACAGGGTGAGCCGCTAGTTAGCAC
TTCCAAAGCCATTCCGTTCCAGAAAAAACCAATTTTTAACTATGAATTCGAACATATACTCCCT
CCAGTTCTATATTTTTTGTCGTTTTGAACGTAATGACATTTACCAAGGAGTAATTAATAGGAGG
TCTATTTATGGTTCTACCGATATTAAATACATTTGAACTCAACATTTTTTCTCACGTTGAAAAC
CACAATTACACTAACTACAGGGGTAAACTCCTCTGAAGCGTTCACTAATCTCTCACACATACAA
AAAATTTGATCCAACCTATAAAACACTTCAACGATAGGAAATACGGAACCGAAGGAAGCATCAA
ACAAGTTCATGTTTTCCTGTATGAAGAATAAAAGGAAGGCTAACATGTGTAAAGTAGCAAAGCT
TATTGTACAGGAGTTATACAAACGTGACCCGTAATCTATCACACTACAGTGCAGCATGATGTGT
ATGTGTGTGTCTCGTGGCTTGTGATGATGAACAACCACATAGGAGTACTCCTTGTCATCACATC
TCAGCAGTTGGGGGGTCCCATCCTTTGGTGGAGAAGACAACAAGGTGCCAGCTATCGTTCAGGC
TAGCTAGCAAGCGACATTAGTGTGCCTGCTTCCTTCCATTTGTGCACCACTCCGGGGATTCAGA
CAACAGGTTCATTGACTACGTTGTACTAGAGGAAGAGGTCGTCCAGCTGCACCGCTTACTGGTA
GCTAATAGTCATGACAGATTAGCTAATAGCTATAGCTATCACTCCTTTTTGGAAGTATTAACGG
AAACCTAATTGTCCTTTTAAGTGATACAAGCCAGCTTAATTACTTGTTTTGTTACTCTAGGTGT
TCCATCTGCCTGCATCTGAATCCAGTTTGTTTCTTTCTAATATTTTTTTTCTCACTTTGAGCCT
GCATGAACCATGTACTGCAGTACTAGGGGGTGTTCGGGAAGTTTAGCCCCTATAACTTATGTTT
TCGAGAGAGGGGGCTAAAGTTTAGCCCTACTTTAGTCCCTCCAACCAAACACCACCTAGGATAT
GCATGCACCAGCTTATATTTCTTTGAATTTTTCCTATCTGAAGAAATGGGAGAGGTGTGGAACA
AAAGCTCTGGAAAAAAAGGACAAAACGCTCGTCTGTTTTGGTGATGCATGCATGCTGCTGCTGC
TGGTGGTGGCGGCGGGGGGCGTGTGATTGAGGAATTTGTCAACTAGCAGCGGCATGCACGCGTC
GGCCGGGCGGGTGGTTTTCCAAGCACCGGCAGCCGAGCGATCGACCCGATCTCATTCTCATCAG
CAACACACACATGCATTTACTCCTTCTCCAGCTCTTCACCTAAACCGCTTCAGACTGAAACCCT
GACGGATAGCTGCCACCTGACCCGTAGTATCGATCTTTTATCAGGCTGCAATTTAAGCGTAGTT
AAGTTTTAACCATGGCGACGCTAGCATCAGTACCCTCGTCGCGACGCAATCAGCAGCGGCAGCA
GCAGCACAGCCACAACGACCACTTGGTAGCTAATTAATCATTTCTGGAGAGCTTAATTAAGCAC
GTCAGGTCATGTCTAATTAATCTGGTCTCCGACGTTAGCTAGACGATCGATCAAACACAGCCAG
GAGCCAGCTATACAGAAAGGACGACGTGCGCCAACCGAGGCTCTCGCTCGCTGACACGTACGTA
CGGACGAACACCATGCATACTCCATACTCCACCTCCTCCTCCATGGCTTATGCTATGGCCCTCC
CTCCCTCCCTCTCTCTCTCTCTCTCTCAAGAACAAAAGACCAAGCAGTCTATGTAGTGCAAAAG
AAATTAAGGTCACTGTTCACTACAGTTAGCCGGTGCAGCTAACAACAGGTCAACAGCCTAACAT
GCATCCGGCTTACTGATAGTGACACAGTATGAACACACAGGTGATAGATGGCACGGATTACATG
AGCTTAAAGACATTTGCTGCAGGCACAGCGAGAGGAAGATCGATCAATACCGAAGCTAGGGAGA
AGAGTGAAGTGAT
Conservation Information
Conserved circRNAs NA
PMCS
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Zhou et al., 2021