Detail information of Os09g0551201_circ_igg.1


General Information
CircRNA Name Os09g0551201_circ_igg.1
ID in PlantcircBase osa_circ_040124
Alias Os_ciR3237
Organism Oryza sativa
Position chr9: 21803860-21808364  JBrowse»
Reference genome IRGSP-1.0.38
Type   igg-circRNA
Identification method find_circ
Parent gene NA
Parent gene annotation NA
Parent gene strand NA
Alternative splicing Os09g0551251_circ_igg.1 Os09g0551201_circ_ag.1 Os09g0551201_circ_ag.2 Os09g0551201_circ_ag.3 Os09g0551251_circ_g.1
Support reads 4
Tissues root
Exon boundary   No-Yes
Splicing signals   CT-AC
Number of exons covered NA
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATTTTGCGATAAGAATAACTTCATTCCTGAATTCCTCTGTCCCTTGTCGAGAATCCTTACTTAA
CCTCTTAACAGCAACTTCCTGACCACCTAGCATTGCcatgtaaactttgccaaaacctccttgc
ccaatcttatttgcttctgagaaattgtgggttgctagagcaatatcctcaaatcttacaaatg
gaagttca
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CATGTAAACTTTGCCAAAACCTCCTTGCCCAATCTTATTTGCTTCTGAGAAATTGTGGGTTGCT
AGAGCAATATCCTCAAATCTTACAAATGGAAGTTCAAGATCTTGGACAGGGTTCCCTTGCCCAA
TCTCTTCAGATGTATTCGCACCATCGAAAATTAGCTTCCTGTGCTTTTCCCGGTTTCTTTTCTT
GCCTGCTCAGAAAATCAAAAGTATCCAACGTTAATTTTCTGATGACTGTACCATGGGGCTTCTA
AGAAAAGAAAAGAATACTGAATATACCTTTAATTTTTAACCATGCAAAGGACATGCATAGGACA
ATAATAATGCTGCTTAACACTGGCAGAACAACCTTGAGTACGGCATTGATCTTCGTCCTCCGAC
CTTTACAACAGTACAAAACGCTGCAAACTTTTACGATCCAACTAGCAATTGTATTTTTTAAGAA
AGAAAGGAAGTAGTAAATTGTAACATAGCGATCCTTGGCACGGTTTCTATTGTAAATTTTGGTA
CCTAAGCTAATAAAAATAAACTAAAAAGGTGGTATTAAAAGGTACCGAGTAGTGGAGTACTAAA
GCATATAATCGGAAAACTATATTCATCCCTTAAAGGGATATCCCCTCGTTTTTACATTTCACTT
AAAAAGTCATCAAAAAATTATTATGATGGATCAACATGTAATATGTCACTTCACGAACATGTAT
ATTCAAATTCAACTTATATAAGTAGAAAAAAAATATAATAAATTTGATTATGAAAAGAACGTGT
AATTCACAGTCAAATTTGTTATTTTTTTGAATTGTATAAGTCGAATTTTAATTTGCATGTTTGC
GAAACAATATATCATATATTGATCTATCTTAACATTTTTTTTCAATTATTTTGATAACTTTTTA
AATGTCATGCATAAAACGAGAAGATGTCCTCTTAAGGGACAAGAATCCACTTCTCATATAATCA
CTGAAATTGTAACCACTTTTTTTTTTGCGAGGAAAATTGTAATCATGCATTTACCCGCGTCAAT
GCTGGCAAGCCTAAGGTGGATCGTGTCACTTTCAGGCCATTCGCCTATCTTCTCTGTGTCAATC
AGCTCGCCTGACCACACCAAGCACCTCGTCACGTCGCCCTCTGATATGCTGCTACTCAGGTTGG
CGTAGGCGTACGCCACGCAGGAGCAGTTGTTGCTGCACTCGGCGGCGCACGCGTCGAGCGTCCT
GTTCGGGACGTGCACGAACTTGTCCGGCGACTTCATCCCCGGCACGGCCAAGAAACGGTCGCTG
CACTGCACCGCCTCCGTCCGCCGGCAACCACGCGAGAACCGGCCGCTGTTCCACTCCTCCGCGC
TCGCCGGCTCGAACCCTGCGAGGCACTTGCACGTCGGGACGGCAGGCGCCCTCGCCGTGTTGTC
GCACAGTAGCCGTTCGGGCCGCAGTAGTTGTAGTAGTTGCAGTCCCATCTAGGCAACTCGGCGA
CCACCGCCCACGCTGACGAGCTGATGTTCCAGCGCTGGAACTGGTACCTGCCGGCGTAGGTAAT
CACATACCTGGTGTGCGGCGAGCCCTCGGAGACGCTGAACGTTATGTATCTCTTCTCGTCGTTG
TCGACAACAGAGAAGTAGAAGATGTCGCTGGAATTCACTTGCAGGTACCGGCTCAACATCATGT
AGCCCGTCCATGGCGCGTCCCTCGAAACCGGGCGCGTCCCTTTCCGGACGAACACCTGGAGGAA
CGTGTCCGGGTCGCCGCCGAACGAGAAGCTTCCCGGCGACGGGTCACCGGGGCCCCTCCACGAC
ACCAAGCGATCGGAGACACGCGTCTTGAACGTCATCCCAAGCTTCATCCCAGGGAGGAACGAGT
CGGTGGGGTGATCGAAGCTCTTCCACAGGATGGTGCCGTTCGGTGACCGGATGACGAGGTTGCC
GGTGTTCAGGAGCACCGCCGTGGAGCCGGAGCCCGCTGCATCGTCGGTGATGTTGGTCGACCAG
CGAACGCGGCCGTCAGCGTCAGACAAGACAAGGTTGGAGGAGTTGGTAAGCGACAGCGTCGGCG
CAGACGAACTAGTGTTTGTGACCGGAGTTCCTCGGTCGGCGACCCACACCACCGTGCGCTGGGG
GATGTCGTTGTACCATATGCCGAGGTACATCTTCTCCGGAGTGGCAGTTGAGGGGGAGAAAAAG
CTCAAGGCGAAGGCACCGCCGTCGGAGACGAGGGTGGCGCCAGGGGAGAGCGGCTTGCCGGTGA
CAAGCCGGTCGTCGGATGCACATGGCGGCGGCAGGAGGAGGAGAACACTGGTGATGCAGGCTAA
AGCCGCAGCTGATCGATCCATCAGAACCTTCTTCCTTTTCAGTATGAGCTTGCACTGAGCAAGT
GAAGTGAGCAGGCTACAATGCTATATCATTGCCTGCGTGTGAAATATAGATTTTGGAACAACTT
GGGGAAACTGTTTTAAACACTCGGGTGGACGTCCACCCGAGATATTAGAATCCATCCTCAACAA
CTTGGCCCACTTCCCTGGCAACGTTGGCAACTTTCCGTACTTGGTTTACCACTTCACACAATGA
AACATCATAAAATAGACTTCCTGCCCCTCAATCCCTCATTGACAAGGGATGAAAAGGAAAACTC
TTTACCTCAGCGGCTATGAAAACCTTGGTCCGTTAAATCCAGTTGTTCCCCATCTTGTGTACTG
AAAGAGACTGATCGCTACAGATCGTGACGAGCTTTTATGTATAGGAAAGGTGAAGACCCGGCAA
GTCTCAAAGCAGGAGCAAAGCTTGGTAAACTGGTCTACTGTTTCATTGCAAAGCGACGAGCATA
GAGAACTTGTCCGGCACCTTCATCCGCGGCAGCGCCAAGAAATCATCGGCGGCGTCGCACGGGC
AGCGCCTCCTTCCGCCGGCAACCCCCCGAGAACCTGCCGGTGCTCCACTCCTCGCCGCTCGCCG
GCTCGAAGCCGTCGAGGCACTTGCGCGTGGCGGCGGCACCCGTCGGTGATGTCGCAGTTGCCGT
ACGTGCTGCACTGGTGCGTCGGGATTCGGGAACGAGTTGAAGGTGACTTAGCTTCATATGAATG
CATACCCTTCGTGTCAGTCAACGTTCTGTCTGTTCAACTGAGTGACATCCTACACTTGTACAGA
TGTTGGCTTTTACTTTTTAAGTATAATGTGTTGTTTAGATTTTTTTAGATTTTTTTTTGTGATA
TAACGAGAAAGACCAAAGAAAGGGCTAGAAAAGAATAGCAACAAATTGAGTTCCAAACCACAAA
TCATGCATCAGCTGTCTGCATTTTTCTTTGGACAGTGATTGTTACATCCTAAGTCAAAGAATTA
TCCTTAGCTACCTCCCCTCTATATCTGTTAGCGTAAAAGTATTCATTGAGTTCTGAATATTATC
TCTCAATTGCTCTATTTCAGAACTCCTTTGTGCAAAATAGGCAGGGCTATTTGGGGCTGGAAGT
GCAGTATTACTCCCATTGTCCAGGAAGAACACAACGGATGACATAAGTGGTCTATCATCAGGGT
TTTCTTGAACACACAACAGTGCTACATGGATACAGAGCAAAACTTCATGCAGTAAGCAACTATC
CATAATTGATGAGTCTGCCAAATCCTTCATCTTCTCTTCCTTCCACATGTTCCACGACTGAAAC
AATGAAAAGCAATATTTGGTTATAAACCAAGAAAAAAATCCAAAATCTTCTAATTTTAATCTGA
GATAAATCTACAGAAAAGATATATACTCACAAAAACTATGAGGTTTGGAAAACCCATGATGTTA
CTAGTCGAGCTTCTCCTTATACCAGTTACAACCTCCAATAGTAACACACCAAAGCTATAGACAT
CGGATTTAGTAGAAAAGATACCTTCCATTGCATACTCAGGAGCCATGTAACCACTGTAACCATT
TCAATTGCAAGAGTTACTAAACATGATTTAAATTAATCACACTTACTTTGAACAATTAATTCAA
ATAGAAACTCACTATGTTCCAACAACACGTCGAGTATTTGTATTTTGTTGATTATCACCAACGA
TCCTCGCCATACCAAAGTCTGCTATCTTGGGTTTCATCTCTGCATCTAGCAAAACATTGCCAGC
TTTAAGATCTCTGTGAATTATGGTTAATCTTGAGTCTTGGTGTAGATAAAGAAGTCCCCTTGCC
ACTCCTTTGATTATATTAAACCGTGTTCTCCAGTCTAGTTTCAATTTCCTCGAAACATCTATAG
AAAGAAGCAAATGTAAGCAATCTATTGTCAAGTCGATTTAGTAGCTTATGCTTGATATGTCACC
AGGGCATACCAAAAAGGGTAGCATCTAGGCTTTTGTTTGGTAAGTACTCATAAATTAGCAGCTT
TTCATCTCCCTCAACACAACAACCAAGAAGGCGAACCAAATTCCTATGCTGCAATTTTGCGATA
AGAATAACTTCATTCCTGAATTCCTCTGTCCCTTGTCGAGAATCCTTACTTAACCTCTTAACAG
CAACTTCCTGACCACCTAGCATTGC
Conservation Information
Conserved circRNAs NA
PMCS 0.347780975
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Ye et al., 2015