Detail information of Os10g0580400_circ_g.2


General Information
CircRNA Name Os10g0580400_circ_g.2
ID in PlantcircBase osa_circ_008210
Alias Os10circ11054
Organism Oryza sativa
Position chr10: 23157578-23158422  JBrowse»
Reference genome IRGSP-1.0.38
Type   e-circRNA
Identification method SMALT, Segemehl
Parent gene Os10g0580400
Parent gene annotation High-affinity urea transporter, Effective urea acquisition and u
tilisation, Effective use of low external urea as a N source (Os
10t0580400-01)
Parent gene strand +
Alternative splicing Os10g0580400_circ_g.1 Os10g0580400_circ_g.3
Support reads 3
Tissues leaf and panicle
Exon boundary   No-No
Splicing signals   CT-AC
Number of exons covered Os10t0580400-01:2
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TCATGGGCAAGTCCGGCTCCGTCCTGCTACTCACCATGCTCTTCATGGCCGTCACATCCGCCGG
CTCCGCCGAGCTGGTGGCCGTCTCCTCCCTCTGCACccccgcccacctcgtcttcctcaccttc
tgcctcctcaccaacgtcatcgtcaccgccatgctcctccttggcggctccgccgtcgtcaacg
ccctcacc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CCCCGCCCACCTCGTCTTCCTCACCTTCTGCCTCCTCACCAACGTCATCGTCACCGCCATGCTC
CTCCTTGGCGGCTCCGCCGTCGTCAACGCCCTCACCGGAGTCAACGTCTACGCCGCCAGCTTCC
TCATCCCGCTCGGCGTCGTCGTCTACACACTCGCCGGCGGCCTCAAGGCCACCTTCCTCGCCAG
CTACATCCACTCCGTCGTCGTGCACGCGGTGCTCGTCGTCTTCGTCTTCCTCGTCTACACCTCC
AGCTCCAAACTCGGGAGCCCGCGTGTGGTGTATGATCGCCTCATGGCCGTCGCCAGCGCCGCGC
GCGACTGCTCCGCCGACCTCTCGCGCAACGGCCAGGCGTGCGGCCCCGTCGCCGGCAACTTCAA
GGGCTCCTACCTCACCATGCTCAGCTCGGGGGGGCTCGTCTTCGGCATCATCAACATCGTCGGC
AACTTTGGAACGGTGTTCGTAGACAACGTACGTACCCAAACGTACGTAGTACTAATAATTATCT
TGGATCGTCAATTAATTACAAGTAATTTAATTTGCTGCAGGGCTACTGGATGAGCGCCATCGCC
GCCCGGCCATCCTCCACCCACAAGGGCTACCTGCTGGGCGGCCTCGTGTGGTTCGCCGTTCCCT
TCTCGCTGGCCACCTCGCTCGGCCTCGGCGCGCTCGCCCTGGACCTCCCGCTCACCGCCGCCGA
GGCAGCCAAGGGCCTGGTGCCCCCGGCCACCGCAACAGCGCTCATGGGCAAGTCCGGCTCCGTC
CTGCTACTCACCATGCTCTTCATGGCCGTCACATCCGCCGGCTCCGCCGAGCTGGTGGCCGTCT
CCTCCCTCTGCAC
Conservation Information
Conserved circRNAs osi_circ_008334
PMCS 0.299928501
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Lu et al., 2015