Detail information of AT1G47200_circ_g.1


General Information
CircRNA Name AT1G47200_circ_g.1
ID in PlantcircBase ath_circ_006119
Alias Ath_circ_FC0669
Organism Arabidpsis thaliana
Position chr1: 17298303-17298605  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method find_circ
Parent gene AT1G47200
Parent gene annotation WPP domain-containing protein 2
Parent gene strand -
Alternative splicing NA
Support reads 2
Tissues whole_plant
Exon boundary   No-No
Splicing signals   CT-AA
Number of exons covered AT1G47200.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   TTCAGAACGGCGTCGCGAGTTTTCTGAGTCGGTGGCCAGATTCGGAGAGAGATTCCTCCTGGTT
TCTTCTCTGATTCGGCTTCTTTCGTCAGATCTGTGTcagattcaagcatcctcttactaatctc
tttagaataaagctcaagaatcttaatcccatcatcatcactcgacacagcattcgaagcaaca
ccataagc
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence CAGATTCAAGCATCCTCTTACTAATCTCTTTAGAATAAAGCTCAAGAATCTTAATCCCATCATC
ATCACTCGACACAGCATTCGAAGCAACACCATAAGCCTCTTCTTCGATAAGTTTCGCGACGGTG
GTTGCATCGTCAGATTTAAGAGTACCGTATCTCTTAGAGAGGATTGATTCGGTGGATAAGGTCT
CGATCAGGCGATTCAGAACGGCGTCGCGAGTTTTCTGAGTCGGTGGCCAGATTCGGAGAGAGAT
TCCTCCTGGTTTCTTCTCTGATTCGGCTTCTTTCGTCAGATCTGTGT
Conservation Information
Conserved circRNAs NA
PMCS 0.160942409
Functional Information
Coding potential N
Potential coding position NA
Potential amino acid sequence NA
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chen et al., 2017a