Detail information of AT2G04235_circ_g.3


General Information
CircRNA Name AT2G04235_circ_g.3
ID in PlantcircBase ath_circ_012762
Alias NA
Organism Arabidpsis thaliana
Position chr2: 1453463-1453660  JBrowse»
Reference genome TAIR10.38
Type   e-circRNA
Identification method CIRCexplorer
Parent gene AT2G04235
Parent gene annotation unknown protein
Parent gene strand +
Alternative splicing AT2G04235_circ_g.2
Support reads 1
Tissues root
Exon boundary   Yes-Yes
Splicing signals   GT-AG
Number of exons covered AT2G04235.3:1
AT2G04235.4:1
AT2G04235.2:1
AT2G04235.1:1
Experimental Information
Sanger sequencing for BSS   NA
PCR primers for BSS    NA
Sanger sequencing for FL    NA
PCR primers for FL    NA
Sequences
Splice junction sequence   ATGACAGGGCCGCAGCCGGCATATGCAGACACTATTATGATTGCTGAAGAGACCTTGAAAAAGA
GAATGAGTTGCAGATCCCTACGTCAGGATATTCTGgttattataactggcaaacgagcagagat
aacacaggagatcaaagaaattgactcaaaaatcaagaacttgattcaatgttttacggcttgc
gacacg
Assembled circRNA sequence   NA
Full-length trsnacripts NA
Genomic sequence GTTATTATAACTGGCAAACGAGCAGAGATAACACAGGAGATCAAAGAAATTGACTCAAAAATCA
AGAACTTGATTCAATGTTTTACGGCTTGCGACACGATGACAGGGCCGCAGCCGGCATATGCAGA
CACTATTATGATTGCTGAAGAGACCTTGAAAAAGAGAATGAGTTGCAGATCCCTACGTCAGGAT
ATTCTG
Conservation Information
Conserved circRNAs NA
PMCS 0.135101009
Functional Information
Coding potential Y
Potential coding position 1453562-1453657(+)
Potential amino acid sequence MTGPQPAYADTIMIAEETLKKRMSCRSLRQDILVIITGKRAEITQEIKEIDSKIKNLIQCFTAC
DTMTGPQPAYADTIMIAEETLKKRMSCRSLRQDILVIITGKRAEITQEIKEIDSKIKNLIQCFT
ACDTMTGPQPAYADTIMIAEETLKKRMSCRSLRQDILVIITGKRAEITQEIKEIDSKIKNLIQC
FTACDTMTGPQPAYADTIMIAEETLKKRMSCRSLRQDIL(+)
Sponge-miRNAs NA
circRNA-miRNA-mRNA network  VISUALIZATION
Potential function description NA
Other Information
References Chu et al., 2017